Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0070
         (673 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3410| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.6  
SB_50761| Best HMM Match : RCSD (HMM E-Value=4.4)                      29   4.5  
SB_23031| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_537| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   7.9  

>SB_3410| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1256

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +1

Query: 349  VLNIWR*KGIVSQ-TISFFPHLVRFGLRIIKRHISNAKNSLESGIRQLFQVCSDLT 513
            VL +WR   IV Q  I F P      L I KR + N   S +SG+ +L +V S LT
Sbjct: 984  VLQMWRSSEIVKQEMIKFIPKHNENLLWITKR-VVNESGSTDSGLDRLERVISILT 1038


>SB_50761| Best HMM Match : RCSD (HMM E-Value=4.4)
          Length = 482

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 126 HLAQHPDKVEYILYTPGAAFRQDRLQTIYTW 34
           H+ ++PD   Y+L   G+  + D +Q I +W
Sbjct: 240 HIVEYPDNEGYMLELLGSILQTDSVQAIQSW 270


>SB_23031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 597

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 19/60 (31%), Positives = 27/60 (45%)
 Frame = -1

Query: 652 ESEEKIDLNILLKFVKKFDGTREHNENIQKTNSKHVVLLPTSIDFDESNRYIPEIIGEYL 473
           E   K  LN+LLKF ++   T+   +  QK   K   +     D  +S  Y+P I   YL
Sbjct: 321 EGPLKCILNVLLKFGRRRSVTQSMKQRKQKKTKK---VQRNESDKSQSRWYVPSIRDNYL 377


>SB_537| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 283

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = +3

Query: 288 TIPVNYIRYISYLTHYKLFLCFKYLAVKRYRVTDYILFPTSRAFRLT 428
           T+ V Y R    +THY+L L   Y  +    VT Y L    R +RLT
Sbjct: 91  TLLVTYYRLTLLVTHYRLTLLVTYFCL-TLLVTCYRLTLLVRYYRLT 136


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,765,496
Number of Sequences: 59808
Number of extensions: 394619
Number of successful extensions: 1238
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1205
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)