Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0070
(673 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39851-5|AAZ32802.1| 408|Caenorhabditis elegans Hypothetical pr... 31 0.56
U39851-4|AAZ32803.1| 572|Caenorhabditis elegans Hypothetical pr... 31 0.56
U39851-3|AAZ32804.1| 563|Caenorhabditis elegans Hypothetical pr... 31 0.56
Z81576-5|CAB04646.2| 1696|Caenorhabditis elegans Hypothetical pr... 28 6.9
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t... 28 6.9
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t... 28 6.9
AF045640-7|AAU05589.1| 978|Caenorhabditis elegans Novel channel... 28 6.9
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel... 28 6.9
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel... 28 6.9
>U39851-5|AAZ32802.1| 408|Caenorhabditis elegans Hypothetical
protein C23G10.7a protein.
Length = 408
Score = 31.5 bits (68), Expect = 0.56
Identities = 16/61 (26%), Positives = 33/61 (54%)
Frame = -1
Query: 634 DLNILLKFVKKFDGTREHNENIQKTNSKHVVLLPTSIDFDESNRYIPEIIGEYLILKNF* 455
D +I L+F+K+ + ++EH E ++K K + ID +S+R ++ + +K +
Sbjct: 138 DTSIQLQFLKQANSSQEHFEFMKKQAFKQLYTWLKGIDLSKSSRKTNSLLDKESYIKTYR 197
Query: 454 H 452
H
Sbjct: 198 H 198
>U39851-4|AAZ32803.1| 572|Caenorhabditis elegans Hypothetical
protein C23G10.7b protein.
Length = 572
Score = 31.5 bits (68), Expect = 0.56
Identities = 16/61 (26%), Positives = 33/61 (54%)
Frame = -1
Query: 634 DLNILLKFVKKFDGTREHNENIQKTNSKHVVLLPTSIDFDESNRYIPEIIGEYLILKNF* 455
D +I L+F+K+ + ++EH E ++K K + ID +S+R ++ + +K +
Sbjct: 138 DTSIQLQFLKQANSSQEHFEFMKKQAFKQLYTWLKGIDLSKSSRKTNSLLDKESYIKTYR 197
Query: 454 H 452
H
Sbjct: 198 H 198
>U39851-3|AAZ32804.1| 563|Caenorhabditis elegans Hypothetical
protein C23G10.7c protein.
Length = 563
Score = 31.5 bits (68), Expect = 0.56
Identities = 16/61 (26%), Positives = 33/61 (54%)
Frame = -1
Query: 634 DLNILLKFVKKFDGTREHNENIQKTNSKHVVLLPTSIDFDESNRYIPEIIGEYLILKNF* 455
D +I L+F+K+ + ++EH E ++K K + ID +S+R ++ + +K +
Sbjct: 138 DTSIQLQFLKQANSSQEHFEFMKKQAFKQLYTWLKGIDLSKSSRKTNSLLDKESYIKTYR 197
Query: 454 H 452
H
Sbjct: 198 H 198
>Z81576-5|CAB04646.2| 1696|Caenorhabditis elegans Hypothetical
protein R10E8.6 protein.
Length = 1696
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +3
Query: 321 YLTHYKLFLCFKYLAVKRYRVTDYILFPTSRAFRLTHNK 437
+L LFL L K+Y++ ++ P +R F +++ K
Sbjct: 250 FLKEVSLFLVLNQLLSKKYKLQHFLESPNAREFLISYRK 288
>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1797
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 103 LVWMLRQVYMVCTRSLFVTIDHVG 174
L WMLR +Y C +FV I+ +G
Sbjct: 392 LQWMLRSMYFQCFVIIFVVINAIG 415
>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1831
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 103 LVWMLRQVYMVCTRSLFVTIDHVG 174
L WMLR +Y C +FV I+ +G
Sbjct: 392 LQWMLRSMYFQCFVIIFVVINAIG 415
>AF045640-7|AAU05589.1| 978|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
b protein.
Length = 978
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 103 LVWMLRQVYMVCTRSLFVTIDHVG 174
L WMLR +Y C +FV I+ +G
Sbjct: 450 LQWMLRSMYFQCFVIIFVVINAIG 473
>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
a protein.
Length = 1562
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 103 LVWMLRQVYMVCTRSLFVTIDHVG 174
L WMLR +Y C +FV I+ +G
Sbjct: 450 LQWMLRSMYFQCFVIIFVVINAIG 473
>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
d protein.
Length = 1861
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 103 LVWMLRQVYMVCTRSLFVTIDHVG 174
L WMLR +Y C +FV I+ +G
Sbjct: 422 LQWMLRSMYFQCFVIIFVVINAIG 445
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,879,461
Number of Sequences: 27780
Number of extensions: 306715
Number of successful extensions: 802
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -