Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0070
         (673 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   6.1  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   6.1  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   8.1  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   8.1  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   8.1  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = -3

Query: 80  LVQHSGKIVYKP 45
           ++ H+GK+V+KP
Sbjct: 126 ILHHTGKVVWKP 137


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 3/20 (15%)
 Frame = -1

Query: 388 SVTRYLFTA---KYLKHKNN 338
           S+ RY+      KY KHKNN
Sbjct: 281 SIDRYIAVTQPIKYAKHKNN 300


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 577 ENIQKTNSKHVVLLPTSIDFDESN 506
           EN +  NS +  LLP  + F+E +
Sbjct: 14  ENWRVNNSNYTELLPIDMRFNEGH 37


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -3

Query: 158 VTNRDRVQTIYTWRSIQ 108
           + N + ++TIY+W  I+
Sbjct: 12  LANGEEIKTIYSWNVIE 28


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +2

Query: 107 SGCCARCIW 133
           SG C++CIW
Sbjct: 358 SGFCSQCIW 366


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,858
Number of Sequences: 438
Number of extensions: 4759
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)