Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0066
(310 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 31 0.052
SPAC1565.07c |||TATA binding protein interacting protein |Schizo... 27 0.84
SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 1.5
SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity f... 25 3.4
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc... 24 4.5
SPCC1235.12c |mug146||meiotically upregulated gene Mug46|Schizos... 24 5.9
SPBC19C7.04c |||conserved fungal protein|Schizosaccharomyces pom... 24 5.9
SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch... 24 5.9
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos... 23 7.9
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc... 23 7.9
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 30.7 bits (66), Expect = 0.052
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 81 PTEKIWRETHWCLWVSLLVEPFVASDAF 164
PT K WCLW+++LV F+ S F
Sbjct: 496 PTSKTGAFVSWCLWITVLVAKFLESYFF 523
>SPAC1565.07c |||TATA binding protein interacting protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 26.6 bits (56), Expect = 0.84
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 90 KIWRETHWCLWVSLLVEPFVASDAFDEND 176
KIW E H L + +P + SD DE+D
Sbjct: 299 KIWPELHGLLISKISYDPNLISDTNDEDD 327
>SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 25.8 bits (54), Expect = 1.5
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Frame = -1
Query: 265 YNTEWSAAPHRHFGSFRSTNSAFRFLKHQSSFSSNASLATKGST--SKLTHRHQ*V--SR 98
YN E +P + +S+ A R+L +S NA + + ST +K + H S+
Sbjct: 105 YNVELPTSPTKITNIGQSSPRALRYLSPESQRIKNAKMKSPISTHLAKYSIHHMGTPPSK 164
Query: 97 QIFSVGRVSNPAVGSAK 47
F VS+PA K
Sbjct: 165 PSFLSSSVSSPASSKQK 181
>SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity
factor complex subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 24.6 bits (51), Expect = 3.4
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = -2
Query: 249 QRRHTVI--LDPSDPLTVLLGSLNTSH 175
Q RH + LDP+ P+ L GS++ H
Sbjct: 133 QSRHPICVNLDPTQPMLALPGSISAFH 159
>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1141
Score = 24.2 bits (50), Expect = 4.5
Identities = 17/47 (36%), Positives = 20/47 (42%)
Frame = +3
Query: 48 FAEPTAGLETRPTEKIWRETHWCLWVSLLVEPFVASDAFDENDDWCL 188
F P+AG P HW L +L S FDEND WC+
Sbjct: 23 FDSPSAGWND-PWSPHSSRYHWQLHSNL-----GESAVFDENDFWCV 63
>SPCC1235.12c |mug146||meiotically upregulated gene
Mug46|Schizosaccharomyces pombe|chr 3|||Manual
Length = 311
Score = 23.8 bits (49), Expect = 5.9
Identities = 20/74 (27%), Positives = 32/74 (43%)
Frame = -1
Query: 289 VNKWRPPAYNTEWSAAPHRHFGSFRSTNSAFRFLKHQSSFSSNASLATKGSTSKLTHRHQ 110
V K R Y T SA P F S +TN + F S++ ++ ++ TH+ +
Sbjct: 15 VRKERVHTYRTLTSATPSLEFFSNENTNRLSEVQCKLTHFLSSSENSSSVRNTR-THKFK 73
Query: 109 *VSRQIFSVGRVSN 68
+ IF R S+
Sbjct: 74 QLLHYIFFSNRSSS 87
>SPBC19C7.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 124
Score = 23.8 bits (49), Expect = 5.9
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -1
Query: 241 PHRHFGSFRSTNSAFRFLKHQSSFSSNASLATKGSTSKLTHRH 113
PHR +R T +FR L +S S + SK + RH
Sbjct: 80 PHREQNQYRPTADSFRPLSF-ASMESKLTQRLSRHLSKTSSRH 121
>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 23.8 bits (49), Expect = 5.9
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = +1
Query: 34 IKSRASQNLPPDWKRDPLRRFGEKLIGVCGLV 129
I +QNL +W+ P +F E++ + G +
Sbjct: 177 IADEQNQNLVKEWESKPFYKFLEEVFQLSGAI 208
>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 400
Score = 23.4 bits (48), Expect = 7.9
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -3
Query: 125 NPQTPMSFSPNLL 87
NP+TP SFS N++
Sbjct: 342 NPKTPQSFSTNIV 354
>SPAC17H9.19c |cdt2|sev1|WD repeat protein
Cdt2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 490
Score = 23.4 bits (48), Expect = 7.9
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 7 LDDVANTNPIKSRASQNLPP 66
L DV I SRA+ +LPP
Sbjct: 9 LSDVGGLRDITSRANNSLPP 28
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,246,539
Number of Sequences: 5004
Number of extensions: 21642
Number of successful extensions: 68
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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