Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0066
(310 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0334 + 22437187-22437322,22437430-22437515,22437927-224380... 28 1.7
08_02_0137 - 13049872-13050893,13051022-13051175 27 2.3
05_03_0622 - 16293341-16293350,16293783-16294063,16294343-162944... 27 2.3
01_03_0259 - 14312197-14312259,14312384-14312456,14312651-143127... 27 2.3
03_02_0199 - 6347980-6348225,6348300-6348341,6348824-6348978,634... 27 3.0
05_04_0198 + 18973973-18974592,18974992-18975440,18976031-189761... 27 4.0
04_01_0275 + 3648866-3649951 27 4.0
02_05_0824 + 32040696-32041301 27 4.0
08_02_0054 + 11729282-11729373,11730258-11730417 26 6.9
03_06_0762 + 36078414-36078539,36078700-36078750,36078832-360789... 25 9.2
01_06_0819 - 32224383-32225831 25 9.2
>11_06_0334 +
22437187-22437322,22437430-22437515,22437927-22438073,
22438166-22438274,22439510-22439633,22439727-22439752,
22439774-22440000,22440084-22440185
Length = 318
Score = 27.9 bits (59), Expect = 1.7
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +3
Query: 87 EKIWRETHWCLWVSLLVEPFVASDAFDENDDWC 185
++IW+ + L +L + +V D E DWC
Sbjct: 268 QRIWQRHYHILAKRMLTKEYVVEDVDGERADWC 300
>08_02_0137 - 13049872-13050893,13051022-13051175
Length = 391
Score = 27.5 bits (58), Expect = 2.3
Identities = 9/27 (33%), Positives = 13/27 (48%)
Frame = -1
Query: 280 WRPPAYNTEWSAAPHRHFGSFRSTNSA 200
W P Y W+ APH + G N++
Sbjct: 323 WEPTGYAPRWTQAPHHNTGGSPRQNTS 349
>05_03_0622 -
16293341-16293350,16293783-16294063,16294343-16294474,
16294561-16294741,16295054-16295096,16295183-16295249,
16296708-16296834,16296985-16297620,16298253-16298761,
16298842-16299157,16299615-16300053,16300128-16300353,
16300441-16300625,16300839-16300950,16301459-16301495,
16301977-16302011,16302497-16302810,16303463-16303475
Length = 1220
Score = 27.5 bits (58), Expect = 2.3
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +3
Query: 75 TRPTEKIWRETHWCLWVSLLVEPFVASDAFDENDDWCLRNLKALLVDRKD 224
T P+ I + + CLW SL ++S A +E D W N + V +D
Sbjct: 732 TNPSHPI-PKPNTCLWSSLRTSLQISSKAINEKDKWTPINKHNIKVFTED 780
>01_03_0259 -
14312197-14312259,14312384-14312456,14312651-14312754,
14313073-14313192,14313278-14313364,14313925-14314023,
14314110-14314203,14314298-14314368,14315258-14316040
Length = 497
Score = 27.5 bits (58), Expect = 2.3
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +3
Query: 93 IWRETHWCLWV-SLLVEPFVASDAFDENDDWCLRNLKALLVDRKDPK 230
I +E HWCL V ++ + F D+ D LR L LVD K
Sbjct: 383 IHKEVHWCLAVINIRDKKFQFLDSLGSMDMKALRTLARYLVDEVKDK 429
>03_02_0199 -
6347980-6348225,6348300-6348341,6348824-6348978,
6349369-6349475,6349608-6349733,6349809-6349890,
6350057-6350130,6351184-6352631,6353391-6353540,
6353664-6353906,6354009-6354266,6355554-6356015
Length = 1130
Score = 27.1 bits (57), Expect = 3.0
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -3
Query: 179 VIVLVERVACDEGLDE*TNPQTPMSFSPNLLSGS 78
+IV ER CDEG+D+ T P S + ++G+
Sbjct: 379 LIVEEERSLCDEGVDQQTTPHESDSSKKDEVAGA 412
>05_04_0198 +
18973973-18974592,18974992-18975440,18976031-18976166,
18976252-18976323,18976389-18976457,18976546-18976617,
18978192-18978250,18978643-18978734
Length = 522
Score = 26.6 bits (56), Expect = 4.0
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +1
Query: 43 RASQNLPPDWKRDPLRRFGEKLIGV 117
R+ QN+P DW DP G GV
Sbjct: 365 RSLQNIPDDWNGDPCMPHGYAWTGV 389
>04_01_0275 + 3648866-3649951
Length = 361
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 12 RRC*HEPYQEPCFAEPTAGLETRPTEKIWRETHWCLW 122
R C + +E C AE LE +P E++ + +C W
Sbjct: 185 RSCNCKRTKERCLAEILRCLEKKPGERVLKNHLYCNW 221
>02_05_0824 + 32040696-32041301
Length = 201
Score = 26.6 bits (56), Expect = 4.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 31 PIKSRASQNLPPDWKRDPLRRFGEKLIGV 117
PI S + LPP+++ +RRF E +G+
Sbjct: 49 PIGSASEFRLPPNYRVVYIRRFTETFVGI 77
>08_02_0054 + 11729282-11729373,11730258-11730417
Length = 83
Score = 25.8 bits (54), Expect = 6.9
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +1
Query: 10 DDVANTNPIKSRASQNLPPDWKRDP 84
DD+ P K+ A + L P+W+ +P
Sbjct: 52 DDMMRLLPQKANADKKLEPEWQANP 76
>03_06_0762 +
36078414-36078539,36078700-36078750,36078832-36078981,
36079055-36079803,36079914-36080013,36080116-36080259,
36080333-36080452,36080532-36080846
Length = 584
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -1
Query: 217 RSTNSAFRFLKHQSSFSSNASLATKGSTSKLTHRHQ 110
RS+ A L+ Q + ++NAS + S+ LT +HQ
Sbjct: 249 RSSRVADLQLQQQDNNNNNASSRSSSSSPSLTRQHQ 284
>01_06_0819 - 32224383-32225831
Length = 482
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 2/19 (10%)
Frame = +1
Query: 211 WIGRIQNDGVAP--LTTLC 261
W R+QNDGV P +T +C
Sbjct: 306 WFSRMQNDGVQPDEVTLIC 324
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,556,474
Number of Sequences: 37544
Number of extensions: 151644
Number of successful extensions: 438
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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