BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ceN-0066 (310 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_44720| Best HMM Match : Helicase_C (HMM E-Value=0.59) 27 4.1 SB_39796| Best HMM Match : VWA (HMM E-Value=0) 27 4.1 SB_24994| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.1 SB_19660| Best HMM Match : ATP-synt_8 (HMM E-Value=3.2) 27 4.1 SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.4 SB_38066| Best HMM Match : FlaF_arch (HMM E-Value=1.2) 26 7.2 SB_57662| Best HMM Match : Drf_FH1 (HMM E-Value=5.8) 26 7.2 SB_16799| Best HMM Match : Extensin_2 (HMM E-Value=0.063) 26 7.2 SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5 SB_19851| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5 SB_43189| Best HMM Match : PGAMP (HMM E-Value=2.1) 25 9.5 >SB_44720| Best HMM Match : Helicase_C (HMM E-Value=0.59) Length = 625 Score = 26.6 bits (56), Expect = 4.1 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = -1 Query: 226 GSFRSTNSAFRFLKHQSSFSSNASLATKGSTS 131 GS ST++ KH S S+A + TKG+T+ Sbjct: 492 GSMESTSNDSPLRKHSSPSLSDAIMRTKGTTN 523 >SB_39796| Best HMM Match : VWA (HMM E-Value=0) Length = 2119 Score = 26.6 bits (56), Expect = 4.1 Identities = 16/42 (38%), Positives = 22/42 (52%) Frame = -1 Query: 184 HQSSFSSNASLATKGSTSKLTHRHQ*VSRQIFSVGRVSNPAV 59 H +S S+ S ATK T+ TH H +I S V++P V Sbjct: 2077 HVTSTSTTVSTATKTETTTATH-HTTKLEEITSTAIVTSPTV 2117 >SB_24994| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1122 Score = 26.6 bits (56), Expect = 4.1 Identities = 17/70 (24%), Positives = 25/70 (35%) Frame = -1 Query: 271 PAYNTEWSAAPHRHFGSFRSTNSAFRFLKHQSSFSSNASLATKGSTSKLTHRHQ*VSRQI 92 P N+ +A RH S + + + H S + NA + G TS Q + Sbjct: 137 PTNNSGHAANNARHPASIKDSYNIANASAHSSGGTVNAQITVSGKTSSSDADQQHTVNAV 196 Query: 91 FSVGRVSNPA 62 NPA Sbjct: 197 QPANNTGNPA 206 >SB_19660| Best HMM Match : ATP-synt_8 (HMM E-Value=3.2) Length = 178 Score = 26.6 bits (56), Expect = 4.1 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = -1 Query: 190 LKHQSSFSSNASLATKGSTSKLTHRH 113 + SS SS +SL+T STSK H H Sbjct: 135 ISSSSSSSSLSSLSTSSSTSKHHHHH 160 >SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2806 Score = 26.2 bits (55), Expect = 5.4 Identities = 18/53 (33%), Positives = 27/53 (50%) Frame = -1 Query: 202 AFRFLKHQSSFSSNASLATKGSTSKLTHRHQ*VSRQIFSVGRVSNPAVGSAKH 44 A + + Q S+SS L +T+KL +RH V R+ S ++ AV KH Sbjct: 1866 ALKIKQEQKSYSSLQPLIF--ATAKLHNRHHPVFRETISSYTLNISAVDCGKH 1916 >SB_38066| Best HMM Match : FlaF_arch (HMM E-Value=1.2) Length = 427 Score = 25.8 bits (54), Expect = 7.2 Identities = 10/25 (40%), Positives = 13/25 (52%) Frame = +3 Query: 87 EKIWRETHWCLWVSLLVEPFVASDA 161 E+ +T W LW +EPF DA Sbjct: 34 EQFENDTPWVLWGRTKMEPFAIDDA 58 >SB_57662| Best HMM Match : Drf_FH1 (HMM E-Value=5.8) Length = 157 Score = 25.8 bits (54), Expect = 7.2 Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 5/26 (19%) Frame = -3 Query: 290 SEQVAPPCVQH-----RVVSGATPSF 228 S+QVAP V H RVV G+TPSF Sbjct: 98 SQQVAPAGVLHTRNSTRVVPGSTPSF 123 >SB_16799| Best HMM Match : Extensin_2 (HMM E-Value=0.063) Length = 597 Score = 25.8 bits (54), Expect = 7.2 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Frame = -1 Query: 280 WRPPAYNTEWSAAPHRHFGSFRSTNSAFRFL-KHQSSFSSNASLAT 146 W P A +++ + H SF++TN+ F+ K+ + S +S +T Sbjct: 49 WEPKASSSQKESKEHNIVCSFKTTNTVTEFIGKNHTERRSGSSDST 94 >SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 4527 Score = 25.4 bits (53), Expect = 9.5 Identities = 15/47 (31%), Positives = 22/47 (46%) Frame = -1 Query: 232 HFGSFRSTNSAFRFLKHQSSFSSNASLATKGSTSKLTHRHQ*VSRQI 92 H S S +SAF F+K + SS+ + K H+ + VS I Sbjct: 1980 HSVSRESASSAFSFIKEDYNSSSSDDMGEPLKLDKFEHQRKHVSLAI 2026 >SB_19851| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 194 Score = 25.4 bits (53), Expect = 9.5 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = +1 Query: 10 DDVANTNPIKSRASQNLPP 66 DD N N K+ AS+NLPP Sbjct: 160 DDDDNNNKKKASASKNLPP 178 >SB_43189| Best HMM Match : PGAMP (HMM E-Value=2.1) Length = 461 Score = 25.4 bits (53), Expect = 9.5 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 3/45 (6%) Frame = -1 Query: 235 RHFGSFRSTNSAFRFLKHQSSFSSNASL---ATKGSTSKLTHRHQ 110 RH GS+RSTN + ++ + + + +T G+T L +Q Sbjct: 272 RHPGSYRSTNLPMLYARYDTLTRTGVPIHPCSTHGTTPSLAQEYQ 316 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,489,254 Number of Sequences: 59808 Number of extensions: 160067 Number of successful extensions: 407 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 389 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 407 length of database: 16,821,457 effective HSP length: 71 effective length of database: 12,575,089 effective search space used: 389827759 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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