SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0066
         (310 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44720| Best HMM Match : Helicase_C (HMM E-Value=0.59)               27   4.1  
SB_39796| Best HMM Match : VWA (HMM E-Value=0)                         27   4.1  
SB_24994| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.1  
SB_19660| Best HMM Match : ATP-synt_8 (HMM E-Value=3.2)                27   4.1  
SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_38066| Best HMM Match : FlaF_arch (HMM E-Value=1.2)                 26   7.2  
SB_57662| Best HMM Match : Drf_FH1 (HMM E-Value=5.8)                   26   7.2  
SB_16799| Best HMM Match : Extensin_2 (HMM E-Value=0.063)              26   7.2  
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  
SB_19851| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  
SB_43189| Best HMM Match : PGAMP (HMM E-Value=2.1)                     25   9.5  

>SB_44720| Best HMM Match : Helicase_C (HMM E-Value=0.59)
          Length = 625

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 226 GSFRSTNSAFRFLKHQSSFSSNASLATKGSTS 131
           GS  ST++     KH S   S+A + TKG+T+
Sbjct: 492 GSMESTSNDSPLRKHSSPSLSDAIMRTKGTTN 523


>SB_39796| Best HMM Match : VWA (HMM E-Value=0)
          Length = 2119

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -1

Query: 184  HQSSFSSNASLATKGSTSKLTHRHQ*VSRQIFSVGRVSNPAV 59
            H +S S+  S ATK  T+  TH H     +I S   V++P V
Sbjct: 2077 HVTSTSTTVSTATKTETTTATH-HTTKLEEITSTAIVTSPTV 2117


>SB_24994| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1122

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 17/70 (24%), Positives = 25/70 (35%)
 Frame = -1

Query: 271 PAYNTEWSAAPHRHFGSFRSTNSAFRFLKHQSSFSSNASLATKGSTSKLTHRHQ*VSRQI 92
           P  N+  +A   RH  S + + +      H S  + NA +   G TS      Q     +
Sbjct: 137 PTNNSGHAANNARHPASIKDSYNIANASAHSSGGTVNAQITVSGKTSSSDADQQHTVNAV 196

Query: 91  FSVGRVSNPA 62
                  NPA
Sbjct: 197 QPANNTGNPA 206


>SB_19660| Best HMM Match : ATP-synt_8 (HMM E-Value=3.2)
          Length = 178

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 190 LKHQSSFSSNASLATKGSTSKLTHRH 113
           +   SS SS +SL+T  STSK  H H
Sbjct: 135 ISSSSSSSSLSSLSTSSSTSKHHHHH 160


>SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2806

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = -1

Query: 202  AFRFLKHQSSFSSNASLATKGSTSKLTHRHQ*VSRQIFSVGRVSNPAVGSAKH 44
            A +  + Q S+SS   L    +T+KL +RH  V R+  S   ++  AV   KH
Sbjct: 1866 ALKIKQEQKSYSSLQPLIF--ATAKLHNRHHPVFRETISSYTLNISAVDCGKH 1916


>SB_38066| Best HMM Match : FlaF_arch (HMM E-Value=1.2)
          Length = 427

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 87  EKIWRETHWCLWVSLLVEPFVASDA 161
           E+   +T W LW    +EPF   DA
Sbjct: 34  EQFENDTPWVLWGRTKMEPFAIDDA 58


>SB_57662| Best HMM Match : Drf_FH1 (HMM E-Value=5.8)
          Length = 157

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 5/26 (19%)
 Frame = -3

Query: 290 SEQVAPPCVQH-----RVVSGATPSF 228
           S+QVAP  V H     RVV G+TPSF
Sbjct: 98  SQQVAPAGVLHTRNSTRVVPGSTPSF 123


>SB_16799| Best HMM Match : Extensin_2 (HMM E-Value=0.063)
          Length = 597

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -1

Query: 280 WRPPAYNTEWSAAPHRHFGSFRSTNSAFRFL-KHQSSFSSNASLAT 146
           W P A +++  +  H    SF++TN+   F+ K+ +   S +S +T
Sbjct: 49  WEPKASSSQKESKEHNIVCSFKTTNTVTEFIGKNHTERRSGSSDST 94


>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4527

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -1

Query: 232  HFGSFRSTNSAFRFLKHQSSFSSNASLATKGSTSKLTHRHQ*VSRQI 92
            H  S  S +SAF F+K   + SS+  +       K  H+ + VS  I
Sbjct: 1980 HSVSRESASSAFSFIKEDYNSSSSDDMGEPLKLDKFEHQRKHVSLAI 2026


>SB_19851| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 194

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 10  DDVANTNPIKSRASQNLPP 66
           DD  N N  K+ AS+NLPP
Sbjct: 160 DDDDNNNKKKASASKNLPP 178


>SB_43189| Best HMM Match : PGAMP (HMM E-Value=2.1)
          Length = 461

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = -1

Query: 235 RHFGSFRSTNSAFRFLKHQSSFSSNASL---ATKGSTSKLTHRHQ 110
           RH GS+RSTN    + ++ +   +   +   +T G+T  L   +Q
Sbjct: 272 RHPGSYRSTNLPMLYARYDTLTRTGVPIHPCSTHGTTPSLAQEYQ 316


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,489,254
Number of Sequences: 59808
Number of extensions: 160067
Number of successful extensions: 407
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 389827759
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -