Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0066
(310 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF017746-1|AAD01632.1| 1198|Caenorhabditis elegans ladder protei... 29 0.50
Z29117-5|CAC42271.1| 1704|Caenorhabditis elegans Hypothetical pr... 28 1.2
Z29117-4|CAA82384.2| 1691|Caenorhabditis elegans Hypothetical pr... 28 1.2
Z29117-3|CAA82383.2| 1689|Caenorhabditis elegans Hypothetical pr... 28 1.2
AF049142-1|AAC24116.1| 1704|Caenorhabditis elegans ATP-binding c... 28 1.2
Z27080-3|CAA81604.3| 379|Caenorhabditis elegans Hypothetical pr... 28 1.5
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 28 1.5
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 28 1.5
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 28 1.5
Z92780-8|CAI46553.1| 587|Caenorhabditis elegans Hypothetical pr... 27 2.7
Z92780-7|CAI46552.1| 624|Caenorhabditis elegans Hypothetical pr... 27 2.7
Z92780-6|CAI46551.1| 691|Caenorhabditis elegans Hypothetical pr... 27 2.7
Z92780-5|CAI46550.1| 532|Caenorhabditis elegans Hypothetical pr... 27 2.7
Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical pr... 27 2.7
Z81068-16|CAJ30230.1| 587|Caenorhabditis elegans Hypothetical p... 27 2.7
Z81068-15|CAB02980.2| 624|Caenorhabditis elegans Hypothetical p... 27 2.7
Z81068-14|CAJ30229.1| 691|Caenorhabditis elegans Hypothetical p... 27 2.7
Z81068-13|CAJ30228.1| 532|Caenorhabditis elegans Hypothetical p... 27 2.7
Z81068-11|CAB02981.1| 454|Caenorhabditis elegans Hypothetical p... 27 2.7
Z68159-7|CAA92286.1| 604|Caenorhabditis elegans Hypothetical pr... 27 2.7
EF443133-1|ABO31113.1| 656|Caenorhabditis elegans LIM-9 isoform... 27 2.7
Z81146-3|CAB03524.1| 496|Caenorhabditis elegans Hypothetical pr... 26 4.7
U20555-1|AAC46918.1| 839|Caenorhabditis elegans zinc finger pro... 26 4.7
L23645-6|AAO91714.1| 635|Caenorhabditis elegans Zinc finger pro... 26 4.7
L23645-4|AAK26137.1| 867|Caenorhabditis elegans Zinc finger pro... 26 4.7
AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical... 26 4.7
AF047659-5|AAC04429.1| 347|Caenorhabditis elegans Hypothetical ... 25 8.1
>AF017746-1|AAD01632.1| 1198|Caenorhabditis elegans ladder protein
protein.
Length = 1198
Score = 29.5 bits (63), Expect = 0.50
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 40 SRASQNLPPDWKRDPLRRFGEKLIGVCGLVY 132
S+A NL D ++ ++ EK+ G+CG VY
Sbjct: 736 SKALVNLAVDRQQGEIKTIAEKMFGICGEVY 766
>Z29117-5|CAC42271.1| 1704|Caenorhabditis elegans Hypothetical protein
C48B4.4c protein.
Length = 1704
Score = 28.3 bits (60), Expect = 1.2
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 30 PYQEPCFAEPTAGLETRPTEKIWRETHWC 116
P Q EPTAG++ + ++W WC
Sbjct: 1520 PTQMIILDEPTAGIDPKARREVWELLLWC 1548
>Z29117-4|CAA82384.2| 1691|Caenorhabditis elegans Hypothetical protein
C48B4.4b protein.
Length = 1691
Score = 28.3 bits (60), Expect = 1.2
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 30 PYQEPCFAEPTAGLETRPTEKIWRETHWC 116
P Q EPTAG++ + ++W WC
Sbjct: 1507 PTQMIILDEPTAGIDPKARREVWELLLWC 1535
>Z29117-3|CAA82383.2| 1689|Caenorhabditis elegans Hypothetical protein
C48B4.4a protein.
Length = 1689
Score = 28.3 bits (60), Expect = 1.2
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 30 PYQEPCFAEPTAGLETRPTEKIWRETHWC 116
P Q EPTAG++ + ++W WC
Sbjct: 1505 PTQMIILDEPTAGIDPKARREVWELLLWC 1533
>AF049142-1|AAC24116.1| 1704|Caenorhabditis elegans ATP-binding
cassette transporter protein.
Length = 1704
Score = 28.3 bits (60), Expect = 1.2
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 30 PYQEPCFAEPTAGLETRPTEKIWRETHWC 116
P Q EPTAG++ + ++W WC
Sbjct: 1520 PTQMIILDEPTAGIDPKARREVWELLLWC 1548
>Z27080-3|CAA81604.3| 379|Caenorhabditis elegans Hypothetical
protein F55H2.7 protein.
Length = 379
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 138 EPFVASDAFDENDDWCLRNLKALLVDRKD 224
EP + FDE D++C K +L DRKD
Sbjct: 242 EPSKKTFKFDERDNYCQFCQKTILGDRKD 270
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -1
Query: 226 GSFRSTNSAFRFLKHQSSFSSNASLATKGSTSKLTHRHQ*VSRQI 92
G S S+ +HQ+ +S A AT ++S +H HQ +Q+
Sbjct: 311 GDDASAKSSSEKPRHQALMTSPAPTATSSTSSSASHHHQQHQQQL 355
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -1
Query: 226 GSFRSTNSAFRFLKHQSSFSSNASLATKGSTSKLTHRHQ*VSRQI 92
G S S+ +HQ+ +S A AT ++S +H HQ +Q+
Sbjct: 311 GDDASAKSSSEKPRHQALMTSPAPTATSSTSSSASHHHQQHQQQL 355
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -1
Query: 226 GSFRSTNSAFRFLKHQSSFSSNASLATKGSTSKLTHRHQ*VSRQI 92
G S S+ +HQ+ +S A AT ++S +H HQ +Q+
Sbjct: 311 GDDASAKSSSEKPRHQALMTSPAPTATSSTSSSASHHHQQHQQQL 355
>Z92780-8|CAI46553.1| 587|Caenorhabditis elegans Hypothetical
protein F25H5.1b protein.
Length = 587
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = +3
Query: 24 HEPYQEPCFAEPTAGLETRPTEKIWRETHWCLW 122
H+P C AG T+ K W H+C W
Sbjct: 310 HKPRCSACDELIFAGEYTKAMNKDWHSDHFCCW 342
>Z92780-7|CAI46552.1| 624|Caenorhabditis elegans Hypothetical
protein F25H5.1a protein.
Length = 624
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = +3
Query: 24 HEPYQEPCFAEPTAGLETRPTEKIWRETHWCLW 122
H+P C AG T+ K W H+C W
Sbjct: 347 HKPRCSACDELIFAGEYTKAMNKDWHSDHFCCW 379
>Z92780-6|CAI46551.1| 691|Caenorhabditis elegans Hypothetical
protein F25H5.1f protein.
Length = 691
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = +3
Query: 24 HEPYQEPCFAEPTAGLETRPTEKIWRETHWCLW 122
H+P C AG T+ K W H+C W
Sbjct: 347 HKPRCSACDELIFAGEYTKAMNKDWHSDHFCCW 379
>Z92780-5|CAI46550.1| 532|Caenorhabditis elegans Hypothetical
protein F25H5.1c protein.
Length = 532
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = +3
Query: 24 HEPYQEPCFAEPTAGLETRPTEKIWRETHWCLW 122
H+P C AG T+ K W H+C W
Sbjct: 255 HKPRCSACDELIFAGEYTKAMNKDWHSDHFCCW 287
>Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical
protein C34F6.1 protein.
Length = 1043
Score = 27.1 bits (57), Expect = 2.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 235 GVAPLTTLCCTQGGATCSLT 294
G+ P TT+CC+ TC LT
Sbjct: 550 GITPDTTVCCSAVQNTCELT 569
>Z81068-16|CAJ30230.1| 587|Caenorhabditis elegans Hypothetical
protein F25H5.1b protein.
Length = 587
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = +3
Query: 24 HEPYQEPCFAEPTAGLETRPTEKIWRETHWCLW 122
H+P C AG T+ K W H+C W
Sbjct: 310 HKPRCSACDELIFAGEYTKAMNKDWHSDHFCCW 342
>Z81068-15|CAB02980.2| 624|Caenorhabditis elegans Hypothetical
protein F25H5.1a protein.
Length = 624
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = +3
Query: 24 HEPYQEPCFAEPTAGLETRPTEKIWRETHWCLW 122
H+P C AG T+ K W H+C W
Sbjct: 347 HKPRCSACDELIFAGEYTKAMNKDWHSDHFCCW 379
>Z81068-14|CAJ30229.1| 691|Caenorhabditis elegans Hypothetical
protein F25H5.1f protein.
Length = 691
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = +3
Query: 24 HEPYQEPCFAEPTAGLETRPTEKIWRETHWCLW 122
H+P C AG T+ K W H+C W
Sbjct: 347 HKPRCSACDELIFAGEYTKAMNKDWHSDHFCCW 379
>Z81068-13|CAJ30228.1| 532|Caenorhabditis elegans Hypothetical
protein F25H5.1c protein.
Length = 532
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = +3
Query: 24 HEPYQEPCFAEPTAGLETRPTEKIWRETHWCLW 122
H+P C AG T+ K W H+C W
Sbjct: 255 HKPRCSACDELIFAGEYTKAMNKDWHSDHFCCW 287
>Z81068-11|CAB02981.1| 454|Caenorhabditis elegans Hypothetical
protein F25H5.1e protein.
Length = 454
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = +3
Query: 24 HEPYQEPCFAEPTAGLETRPTEKIWRETHWCLW 122
H+P C AG T+ K W H+C W
Sbjct: 177 HKPRCSACDELIFAGEYTKAMNKDWHSDHFCCW 209
>Z68159-7|CAA92286.1| 604|Caenorhabditis elegans Hypothetical
protein C33D9.8 protein.
Length = 604
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +3
Query: 147 VASDAFDENDDWCLRNLKALLVDRKDPK*RCGAADHSVL 263
+ SD D+ D+W RN + V + +PK G ++ +++
Sbjct: 366 IISDLLDQKDEWQPRNTQITQVTQLNPKLIFGESEQTLI 404
>EF443133-1|ABO31113.1| 656|Caenorhabditis elegans LIM-9 isoform
protein.
Length = 656
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = +3
Query: 24 HEPYQEPCFAEPTAGLETRPTEKIWRETHWCLW 122
H+P C AG T+ K W H+C W
Sbjct: 347 HKPRCSACDELIFAGEYTKAMNKDWHSDHFCCW 379
>Z81146-3|CAB03524.1| 496|Caenorhabditis elegans Hypothetical
protein K10D11.5 protein.
Length = 496
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 211 TNSAFRFLKHQSSFSSNASLATKG 140
TN+ F + S FSSNA + KG
Sbjct: 347 TNAFLNFTRSSSQFSSNARIGRKG 370
>U20555-1|AAC46918.1| 839|Caenorhabditis elegans zinc finger
protein protein.
Length = 839
Score = 26.2 bits (55), Expect = 4.7
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = -2
Query: 285 TSGAPLRTTQSGQRRHTVILDPSDPLTVLLGSLNTS 178
T+ +P TT S R +V DPS PLT+ SL++S
Sbjct: 280 TAFSPPLTTSS---RSSVAQDPSPPLTINKNSLSSS 312
>L23645-6|AAO91714.1| 635|Caenorhabditis elegans Zinc finger
protein protein 1,isoform c protein.
Length = 635
Score = 26.2 bits (55), Expect = 4.7
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = -2
Query: 285 TSGAPLRTTQSGQRRHTVILDPSDPLTVLLGSLNTS 178
T+ +P TT S R +V DPS PLT+ SL++S
Sbjct: 48 TAFSPPLTTSS---RSSVAQDPSPPLTINKNSLSSS 80
>L23645-4|AAK26137.1| 867|Caenorhabditis elegans Zinc finger
protein protein 1,isoform a protein.
Length = 867
Score = 26.2 bits (55), Expect = 4.7
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = -2
Query: 285 TSGAPLRTTQSGQRRHTVILDPSDPLTVLLGSLNTS 178
T+ +P TT S R +V DPS PLT+ SL++S
Sbjct: 280 TAFSPPLTTSS---RSSVAQDPSPPLTINKNSLSSS 312
>AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical
protein Y47G6A.29 protein.
Length = 2460
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 22 NTNPIKSRASQNLPPDWKRDPLRRFGEKLIGVCGLVY 132
NTN +R Q PPD R P E + + G+V+
Sbjct: 160 NTNMNDARRPQTKPPDTCRSPPSSVWENMWNLLGIVH 196
>AF047659-5|AAC04429.1| 347|Caenorhabditis elegans Hypothetical
protein K07H8.8 protein.
Length = 347
Score = 25.4 bits (53), Expect = 8.1
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -3
Query: 119 QTPMSFSPNLLSGSRFQSGGRFCEARLLIGFVLATSS 9
Q P +F+ N + S GGRFCE L F + S
Sbjct: 138 QDPEAFTKNNRTISTEMYGGRFCENNELKSFKMVQRS 174
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,953,211
Number of Sequences: 27780
Number of extensions: 122795
Number of successful extensions: 382
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -