Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0064
         (490 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29772| Best HMM Match : HEAT (HMM E-Value=1.54143e-44)             221   2e-58
SB_43136| Best HMM Match : HEAT (HMM E-Value=1.7e-15)                  42   4e-04
SB_56482| Best HMM Match : HEAT (HMM E-Value=1.9e-16)                  39   0.003
SB_40454| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.67 
SB_59449| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_58065| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_56992| Best HMM Match : Copper-bind (HMM E-Value=0.82)              28   3.6  
SB_18615| Best HMM Match : dTDP_sugar_isom (HMM E-Value=8.9)           28   3.6  
SB_14574| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_5848| Best HMM Match : DUF589 (HMM E-Value=5.4)                     28   4.7  
SB_33459| Best HMM Match : HEAT (HMM E-Value=2.5e-05)                  27   6.3  
SB_49262| Best HMM Match : Virus_P-coat (HMM E-Value=1.8)              27   6.3  
SB_49390| Best HMM Match : HEAT (HMM E-Value=2e-08)                    27   8.3  

>SB_29772| Best HMM Match : HEAT (HMM E-Value=1.54143e-44)
          Length = 405

 Score =  221 bits (541), Expect = 2e-58
 Identities = 108/162 (66%), Positives = 129/162 (79%)
 Frame = +2

Query: 5   CAVVASLLAPEDMEQHVMPTVRARAGDTSWRVRYMVADKFVELQQAVGPELARTDLAQIF 184
           C  +A +L  ED +  +MPTV++ A D SWRVRYMVADK  ELQ+AVGPE+ +T+L   F
Sbjct: 137 CPQIAQVLPHEDKDSILMPTVKSAAYDKSWRVRYMVADKITELQKAVGPEITKTELVPAF 196

Query: 185 QALLKDSEAEVRAAAAGKVKDFCMNLDKAHQEHIIMTMILPQIKDLVCDANQHVKSALAS 364
           Q LLKD EAEVRAAAAGKVK+F  +L    +E ++MT ILP +K+LV D NQHVKSALAS
Sbjct: 197 QVLLKDCEAEVRAAAAGKVKEFSESLSSDIRESVLMTNILPCVKELVIDPNQHVKSALAS 256

Query: 365 VIMGLSPIVGRQNTIEHLLPLFLTQLKDECPEVRLNIISNLE 490
           VIMGLSP++G+ NTIEHLLPLFLT LKDE PEVRLNIISNL+
Sbjct: 257 VIMGLSPLLGKDNTIEHLLPLFLTMLKDEFPEVRLNIISNLD 298



 Score = 35.5 bits (78), Expect = 0.024
 Identities = 33/155 (21%), Positives = 64/155 (41%), Gaps = 4/155 (2%)
 Frame = +2

Query: 26  LAPEDMEQHVMPTVRARAGDTSWRVRYMVADKFVELQQAVGPELAR----TDLAQIFQAL 193
           + PE  +  ++P  +    D    VR   A K  E  +++  ++      T++    + L
Sbjct: 183 VGPEITKTELVPAFQVLLKDCEAEVRAAAAGKVKEFSESLSSDIRESVLMTNILPCVKEL 242

Query: 194 LKDSEAEVRAAAAGKVKDFCMNLDKAHQEHIIMTMILPQIKDLVCDANQHVKSALASVIM 373
           + D    V++A A  +      L K +    ++ + L  +KD   +   ++ S L  V  
Sbjct: 243 VIDPNQHVKSALASVIMGLSPLLGKDNTIEHLLPLFLTMLKDEFPEVRLNIISNLDCV-- 300

Query: 374 GLSPIVGRQNTIEHLLPLFLTQLKDECPEVRLNII 478
             + ++G     + LLP  +   +D    VRL II
Sbjct: 301 --NQVIGVHQLSQSLLPAIVELAEDTKWRVRLAII 333



 Score = 34.7 bits (76), Expect = 0.041
 Identities = 20/77 (25%), Positives = 34/77 (44%)
 Frame = +2

Query: 14  VASLLAPEDMEQHVMPTVRARAGDTSWRVRYMVADKFVELQQAVGPELARTDLAQIFQAL 193
           V  ++    + Q ++P +   A DT WRVR  + +    L   +G +     L  +  + 
Sbjct: 300 VNQVIGVHQLSQSLLPAIVELAEDTKWRVRLAIIEYMPLLAGQLGVDFFDEKLNTLCMSW 359

Query: 194 LKDSEAEVRAAAAGKVK 244
           L D    +R AAA  +K
Sbjct: 360 LVDHVCSIREAAAINLK 376


>SB_43136| Best HMM Match : HEAT (HMM E-Value=1.7e-15)
          Length = 426

 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 34/169 (20%), Positives = 66/169 (39%), Gaps = 10/169 (5%)
 Frame = +2

Query: 14  VASLLAPEDMEQHVMPTVRARAGDTSWRVRYMVADKFVELQQAVGPELARTDLAQIFQAL 193
           V  ++    + Q ++P +   A DT WRVR  + +    L   +G +     L  +  + 
Sbjct: 15  VNQVIGVHQLSQSLLPAIVELAEDTKWRVRLAIIEYMPLLAGQLGVDFFDEKLNTLCMSW 74

Query: 194 LKDSEAEVRAAAAGKVKDFCMNLDKAHQEHIIMTMILPQIKD--------LVCDANQHVK 349
           L D    +R AAA  +K           +  ++  +L   ++         +   +   +
Sbjct: 75  LVDHVCSIREAAAINLKKLVEKFGPEWAQQQVIPKVLAMAREPNYLHRLTTLNSVSVRTQ 134

Query: 350 SALASVIM--GLSPIVGRQNTIEHLLPLFLTQLKDECPEVRLNIISNLE 490
               SV+    L+ + G +N  + +LP+ L    D    VR N+   L+
Sbjct: 135 PIFLSVVQYGVLADVCGPENISKLMLPVVLNLATDNVANVRFNVAKTLQ 183



 Score = 29.1 bits (62), Expect = 2.1
 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
 Frame = +2

Query: 11  VVASLLAPEDMEQHVMPTVRARAGDTSWRVRYMVADKFVELQQAVGPEL-ARTDLAQIFQ 187
           V+A +  PE++ + ++P V   A D    VR+ VA    +  Q +GP L A T  AQI  
Sbjct: 145 VLADVCGPENISKLMLPVVLNLATDNVANVRFNVA----KTLQKIGPLLDASTIQAQIKP 200

Query: 188 ALLK---DSEAEVRAAAAGKVKD 247
            L K   D++ +V+  A   + D
Sbjct: 201 CLDKLNADADVDVKYFAQEALTD 223


>SB_56482| Best HMM Match : HEAT (HMM E-Value=1.9e-16)
          Length = 425

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = +2

Query: 62  TVRARAGDTSWRVRYMVADKFVELQQAVGPELARTDLAQIFQALLKD 202
           T    A D  W+VR  +A    EL Q +G +L +T+L   F + LKD
Sbjct: 53  TYELLASDMQWKVRRTLAFSIHELAQVLGEDLTKTELVPTFNSFLKD 99


>SB_40454| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 137

 Score = 30.7 bits (66), Expect = 0.67
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = +2

Query: 161 RTDLAQIFQALLKDSEAEVRAAAAGKVKDFCMNLDKAHQE---HIIMTMILPQIKDL 322
           R +++Q+   L++D  A V       +KDFC +   A +E   H + T++LP    L
Sbjct: 11  REEISQLLPKLIQDKSATVEM-----IKDFCRSFKVAEEEALLHYVKTLLLPTANPL 62


>SB_59449| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 247

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 364 RHHGPEPHSGQTEHY*TSPAAVPHTTEG*MSRSPTQH 474
           +  GP P    T+    SP  VPH T+G   + P+QH
Sbjct: 156 QRQGPRPVPDPTDGQRPSPRPVPHPTDG---QRPSQH 189


>SB_58065| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 600

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +2

Query: 311 IKDLVCDANQHVKSALASVIMGLSPIVGRQNTIEHLLP--LFLTQLKDECP 457
           +KD+V  + Q+VK      ++GLS  VG+ +   + LP  L+  Q   E P
Sbjct: 50  VKDIVMQSLQYVKLGKKKQLIGLSGFVGKHDENNNELPTNLYAQQWTLELP 100


>SB_56992| Best HMM Match : Copper-bind (HMM E-Value=0.82)
          Length = 1642

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 271 SFIQVHTEVLDLPSSCGSNLSLRVLEQCLED 179
           + +  +T V+D PSS  SNL+L  LE   ED
Sbjct: 901 TLLDTNTSVVDKPSSIFSNLTLNGLETIPED 931


>SB_18615| Best HMM Match : dTDP_sugar_isom (HMM E-Value=8.9)
          Length = 220

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 133 QLYELISDHVPHPPRSISGTSPHGRHHMLLHILGC 29
           +L  L SD  P PP+  +G  P  RH   L + GC
Sbjct: 68  KLDSLFSDFTPPPPKKNTGYGPVQRHES-LSVSGC 101


>SB_14574| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 364 RHHGPEPHSGQTEHY*TSPAAVPHTTEG*MSRSPTQH 474
           +  GP P    T+    SP  VPH T+G   + P+QH
Sbjct: 33  QRQGPRPVPDPTDGQRPSPRPVPHPTDG---QRPSQH 66


>SB_5848| Best HMM Match : DUF589 (HMM E-Value=5.4)
          Length = 463

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 200 DSEAEVRAAAAGKVKDFCMNLDKAHQE 280
           DSE+ +R+ A G V D  +N DKA  E
Sbjct: 132 DSESSLRSIATGVVADSRVNCDKAQAE 158


>SB_33459| Best HMM Match : HEAT (HMM E-Value=2.5e-05)
          Length = 136

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +2

Query: 299 ILPQIKDLVCDANQHVKSALASVIMG-LSPIVGRQNTIEHLLPLFLTQLKDECPEVR 466
           ++  +     D++  V++ +  V+   L  +  R +    LLP  LT L DE P++R
Sbjct: 17  VMSHLAQRTFDSSPTVRAMVTKVVGAWLLELRDRYSYFHKLLPYVLTGLSDEMPDIR 73


>SB_49262| Best HMM Match : Virus_P-coat (HMM E-Value=1.8)
          Length = 586

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 283 VFLMSFIQVHTEVLDLPSSCGSNLSLRVLEQCL 185
           V LM+F+ V +   DLP SC +   L  L + L
Sbjct: 55  VNLMAFLGVSSGTYDLPCSCKTKTELNALNELL 87


>SB_49390| Best HMM Match : HEAT (HMM E-Value=2e-08)
          Length = 433

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 407 IEHLLPLFLTQLKDECPEVRLN 472
           I+HL P+F   LKD   EVR N
Sbjct: 383 IQHLYPVFFGALKDSDDEVRSN 404


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,385,975
Number of Sequences: 59808
Number of extensions: 315111
Number of successful extensions: 1105
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1101
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)