Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0063
         (681 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    26   0.25 
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    26   0.25 
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    26   0.25 
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    26   0.25 
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    26   0.25 
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           26   0.25 
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    26   0.25 
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    26   0.25 
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    22   4.0  
DQ855500-1|ABH88187.1|  126|Tribolium castaneum chemosensory pro...    21   9.3  
DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.      21   9.3  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    21   9.3  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          21   9.3  

>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +3

Query: 342 QVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEPQ 440
           QVAP  P+   A    GH L  T+    Q +PQ
Sbjct: 47  QVAPQYPQHPYAAPAPGHGLQPTMGDYTQLQPQ 79


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +3

Query: 342 QVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEPQ 440
           QVAP  P+   A    GH L  T+    Q +PQ
Sbjct: 47  QVAPQYPQHPYAAPAPGHGLQPTMGDYTQLQPQ 79


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +3

Query: 342 QVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEPQ 440
           QVAP  P+   A    GH L  T+    Q +PQ
Sbjct: 47  QVAPQYPQHPYAAPAPGHGLQPTMGDYTQLQPQ 79


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +3

Query: 342 QVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEPQ 440
           QVAP  P+   A    GH L  T+    Q +PQ
Sbjct: 47  QVAPQYPQHPYAAPAPGHGLQPTMGDYTQLQPQ 79


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +3

Query: 342 QVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEPQ 440
           QVAP  P+   A    GH L  T+    Q +PQ
Sbjct: 47  QVAPQYPQHPYAAPAPGHGLQPTMGDYTQLQPQ 79


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +3

Query: 342 QVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEPQ 440
           QVAP  P+   A    GH L  T+    Q +PQ
Sbjct: 47  QVAPQYPQHPYAAPAPGHGLQPTMGDYTQLQPQ 79


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +3

Query: 342 QVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEPQ 440
           QVAP  P+   A    GH L  T+    Q +PQ
Sbjct: 47  QVAPQYPQHPYAAPAPGHGLQPTMGDYTQLQPQ 79


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +3

Query: 342 QVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEPQ 440
           QVAP  P+   A    GH L  T+    Q +PQ
Sbjct: 47  QVAPQYPQHPYAAPAPGHGLQPTMGDYTQLQPQ 79


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 14/53 (26%), Positives = 19/53 (35%)
 Frame = +3

Query: 288 HAAQAGRTRPHEHSSDKRQVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEPQAD 446
           H  Q+G    H H       A +     S G    ++  +  HH  QA P  D
Sbjct: 14  HHHQSGSVAGHHHEQSAAAAAAYRSFPLSLGMSP-YASSQHHHHHLQARPPQD 65


>DQ855500-1|ABH88187.1|  126|Tribolium castaneum chemosensory
           protein 14 protein.
          Length = 126

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 471 PHGQVVDRDLPEVL 430
           P G+ + RD+PE L
Sbjct: 55  PEGEELKRDIPEAL 68


>DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.
          Length = 162

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -3

Query: 391 PSPRPALRSRGRCGATCRLSEECSW 317
           P P P+    GRC +  ++S    W
Sbjct: 57  PKPIPSFACIGRCASYIQVSGSKIW 81


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +3

Query: 351 PHLPRLRSAGRGDGHSLPRTLHHRRQAEPQ 440
           P  P+   A    GH L  T+    Q +PQ
Sbjct: 6   PQYPQHPYAAPAPGHGLQPTMGDYTQLQPQ 35


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 379 DEETGIPFRGLFIIDDKQN 435
           D ++ +PF GLFI +   N
Sbjct: 15  DSDSKLPFSGLFIENQAGN 33


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,871
Number of Sequences: 336
Number of extensions: 2434
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)