Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0063
         (681 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14608| Best HMM Match : AhpC-TSA (HMM E-Value=0)                   282   2e-76
SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012)             158   3e-39
SB_22073| Best HMM Match : No HMM Matches (HMM E-Value=.)             129   2e-30
SB_35139| Best HMM Match : No HMM Matches (HMM E-Value=.)              80   2e-15
SB_33971| Best HMM Match : AhpC-TSA (HMM E-Value=2e-06)                46   2e-05
SB_34154| Best HMM Match : UvrD-helicase (HMM E-Value=0.064)           31   0.86 
SB_35926| Best HMM Match : Bac_DNA_binding (HMM E-Value=7.5)           29   3.5  
SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.5  
SB_54429| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_37636| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_49880| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_7856| Best HMM Match : F5_F8_type_C (HMM E-Value=3.6e-11)           28   8.0  
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_14608| Best HMM Match : AhpC-TSA (HMM E-Value=0)
          Length = 265

 Score =  282 bits (691), Expect = 2e-76
 Identities = 130/190 (68%), Positives = 155/190 (81%), Gaps = 4/190 (2%)
 Frame = +1

Query: 13  KVFSFNKMPLQMT---KPAPQFKATAV-VNGEFKDISLSDYKGKYVVLFFYPLDFTFVCP 180
           ++ SF++  +  T   KPAP F  TAV  +GEF D+ LSDYKGKYVVLFFYPLDFTFVCP
Sbjct: 39  RMMSFSRADMSKTAIQKPAPAFSGTAVNKHGEFIDLKLSDYKGKYVVLFFYPLDFTFVCP 98

Query: 181 TEIIAFSEKADEFRKIGCEVLGASTDSHFTHLAWINTPRKQGGLGPMNIPLISDKSHRIS 360
           TEIIAFS++ DEF+ I CEV+  S DS ++HLAW N PRK+GG+G +NIP++SD + +IS
Sbjct: 99  TEIIAFSDRVDEFKAINCEVIACSVDSEYSHLAWTNVPRKKGGIGNINIPILSDLTKQIS 158

Query: 361 RDYGVLDEETGIPFRGLFIIDDKQNLRQITINDLPVGRSVEETLRLVQAFQFTDKHGEVC 540
           +DYGVL E+ G+  RGLFIIDDK  LRQITINDLPVGRSV+ETLRL+QAFQFTDKHGEVC
Sbjct: 159 KDYGVLLEDQGVALRGLFIIDDKGILRQITINDLPVGRSVDETLRLIQAFQFTDKHGEVC 218

Query: 541 PANWRPGAKT 570
           PA WRPGA T
Sbjct: 219 PAGWRPGADT 228


>SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012)
          Length = 704

 Score =  158 bits (384), Expect = 3e-39
 Identities = 71/95 (74%), Positives = 83/95 (87%)
 Frame = +1

Query: 286 NTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQITINDLP 465
           N PRK+GG+G +NIP++SD + +IS+DYGVL E+ G+  RGLFIIDDK  LRQITINDLP
Sbjct: 3   NVPRKKGGIGNINIPILSDLTKQISKDYGVLLEDQGVALRGLFIIDDKGILRQITINDLP 62

Query: 466 VGRSVEETLRLVQAFQFTDKHGEVCPANWRPGAKT 570
           VGRSV+ETLRL+QAFQFTDKHGEVCPA WRPGA T
Sbjct: 63  VGRSVDETLRLIQAFQFTDKHGEVCPAGWRPGADT 97


>SB_22073| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 237

 Score =  129 bits (312), Expect = 2e-30
 Identities = 56/80 (70%), Positives = 69/80 (86%)
 Frame = +1

Query: 43  QMTKPAPQFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFR 222
           Q++KPAP ++ TAVVNGEFK++ LSD++GKY+V FFYPLDFTFVCPTEIIAFS++ +EFR
Sbjct: 55  QISKPAPFWEGTAVVNGEFKELKLSDFEGKYLVFFFYPLDFTFVCPTEIIAFSDRIEEFR 114

Query: 223 KIGCEVLGASTDSHFTHLAW 282
            I  EV+G S DS FTHLAW
Sbjct: 115 AINTEVVGCSVDSVFTHLAW 134



 Score = 77.4 bits (182), Expect = 1e-14
 Identities = 36/41 (87%), Positives = 39/41 (95%)
 Frame = +1

Query: 406 GLFIIDDKQNLRQITINDLPVGRSVEETLRLVQAFQFTDKH 528
           GLFIIDDK  LRQIT+NDLPVGRSV+ETLRLVQAFQ+TDKH
Sbjct: 135 GLFIIDDKGVLRQITMNDLPVGRSVDETLRLVQAFQYTDKH 175


>SB_35139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 56

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 34/47 (72%), Positives = 39/47 (82%)
 Frame = +1

Query: 466 VGRSVEETLRLVQAFQFTDKHGEVCPANWRPGAKTIKPDTKAAQEYF 606
           VGRSV+ETLRLVQAFQ+TDKHGEVCPA W+PG  TI PD    ++YF
Sbjct: 1   VGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGKDTIIPDPTQKKKYF 47


>SB_33971| Best HMM Match : AhpC-TSA (HMM E-Value=2e-06)
          Length = 160

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 12/131 (9%)
 Frame = +1

Query: 244 GASTDSHFTHLAWINTPRKQG-----GLGPMNIPLISDKSHRISRDYGVLD----EETGI 396
           G S D   +H  W+    K            N P+I+D+   ++   G++D    +  G+
Sbjct: 3   GLSCDDAESHRGWVKDITKYNLEQNKSSAKFNYPIIADERRELAVKLGMVDPDEKDSKGL 62

Query: 397 PF--RGLFIIDDKQNLRQITINDLPVGRSVEETLRLVQAFQFTDKHGEVCPANWRPGAK- 567
           P   R +FII   + L+   +     GR+ +E LR++ + Q T       P +W+ G   
Sbjct: 63  PLTCRAVFIIGPDKKLKLSILYPATTGRNFDEILRVIDSLQLTATKKVATPVDWKLGGDC 122

Query: 568 TIKPDTKAAQE 600
            + P  K  +E
Sbjct: 123 MVIPSIKPEEE 133


>SB_34154| Best HMM Match : UvrD-helicase (HMM E-Value=0.064)
          Length = 1064

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
 Frame = +1

Query: 334 ISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQITINDLPVGR-SVEE--TLRLVQ 504
           + DKS    R +  LD+  GI   G  ++ +  N+ +ITIN+    +  ++   TL  V 
Sbjct: 137 VQDKSG--IRIFSDLDDAHGIIDFGKRLLTEDTNIIEITINNTSTTQVKIKRFSTLEEVP 194

Query: 505 AFQFTDKHG 531
            F F+DKHG
Sbjct: 195 EFSFSDKHG 203


>SB_35926| Best HMM Match : Bac_DNA_binding (HMM E-Value=7.5)
          Length = 380

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 513 VHGQARRGVPRQLEARRQDHQARHQGRPGVLRRRQLD 623
           VH + R+G   +L  +    + R QG+  VLR RQ D
Sbjct: 262 VHPRPRQGTDVRLPLQLHQREVRRQGKATVLRYRQSD 298


>SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1755

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/58 (24%), Positives = 25/58 (43%)
 Frame = +3

Query: 294 AQAGRTRPHEHSSDKRQVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEPQADHDQRPAR 467
           + AG     +    +R+ A H PR+   G G+ HS+P  +      +P     + P +
Sbjct: 18  SSAGEESLADSGEGRRENARHKPRVMIGGEGEKHSVPAVITIPSVTDPGVAEGRPPRK 75


>SB_54429| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 383

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +3

Query: 528 RRGVPRQLEARRQDHQARHQGRPGVLRRRQLDTTPHQQS 644
           R G   +LE  RQDH +R   RP   RRR+ D    Q++
Sbjct: 223 REGGQEKLE--RQDHVSRTYQRPSADRRRKEDNVHRQET 259


>SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3293

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 18/61 (29%), Positives = 24/61 (39%)
 Frame = +3

Query: 285 QHAAQAGRTRPHEHSSDKRQVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEPQADHDQRPA 464
           QH+     T P + SS  +Q  PH P  R   R        T H+   + PQ+      A
Sbjct: 784 QHSESVSETSP-QLSSTAQQTPPHSPATRHNARTSSPQSLATRHNAWTSSPQSPATLHNA 842

Query: 465 R 467
           R
Sbjct: 843 R 843


>SB_37636| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 205

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/57 (29%), Positives = 21/57 (36%)
 Frame = +3

Query: 297 QAGRTRPHEHSSDKRQVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEPQADHDQRPAR 467
           Q GR RP++H      V  H PR R   R    S P +   R        H  +  R
Sbjct: 147 QTGRMRPYDHQRRGCIVRNHRPRDRQQSRRTARSPPHSTTDREDGTLAERHAPQAPR 203


>SB_49880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 356

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +3

Query: 528 RRGVPRQLEARRQDHQARHQGRPGVLRR 611
           RR +PR LE +RQ  Q R   R  +LRR
Sbjct: 299 RRRIPRLLEQQRQIRQQRLPERLAILRR 326


>SB_7856| Best HMM Match : F5_F8_type_C (HMM E-Value=3.6e-11)
          Length = 334

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +1

Query: 340 DKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQI--TIND 459
           D    ++  Y V+D+ET I   GL  I +K+N +++  T ND
Sbjct: 275 DTIREVNCRYNVVDKETRIKVTGLLTIKEKKNGKELYRTRND 316


>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1926

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +3

Query: 300 AGRTRPHEHSSDKRQVAPHLPRLRSAGRGDGHSLPR 407
           +G+  P   SSD R     L  LRS   G  +SLPR
Sbjct: 399 SGKEGPMSDSSDLRAALKELAYLRSIQTGGEYSLPR 434


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,666,959
Number of Sequences: 59808
Number of extensions: 356306
Number of successful extensions: 1533
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1529
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)