Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0062
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    31   0.15 
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar...    27   2.5  
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    27   3.3  
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe...    27   3.3  
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch...    26   5.8  
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    26   5.8  
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |...    26   5.8  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    26   5.8  
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo...    25   7.6  
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ...    25   7.6  

>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 23/105 (21%), Positives = 54/105 (51%)
 Frame = +1

Query: 76  KVPEAEDKPLNVVENLSSEQELIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIKPSLK 255
           K P +E  P   V+ L+ +   I    +I +++ +  ++  +VV+ P + ++ +I+ +  
Sbjct: 377 KAPTSEAPPKGHVKQLAKQLGNIYMPQSINNVEPTSHSSISKVVN-PSEKVISKIERACL 435

Query: 256 SDLETLKCRMKMRKSRGL*SI*EIPGPRSIKSTKHRILNTTKMLK 390
           +    +   +KM K+  L      P PR++ +T+H+I +  ++ K
Sbjct: 436 AGNGNVHPSIKMEKNLEL-----NPHPRTLNATEHKINSRIQVSK 475


>SPBC26H8.09c |snf59||SWI/SNF complex subunit
           Snf59|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 515

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +3

Query: 294 EIKRPLVDLRNPGPPQHQEHETQNPEHHEDA--EKIVSSVKNDINTAE 431
           E  +P  D RN GP Q  + + + PE H ++  E+ +  + ++ N  E
Sbjct: 148 EEPKPSGDFRNEGPKQCDDSKIEKPELHVNSKIEEPIHRIDSEHNEPE 195


>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +3

Query: 336 PQHQEHETQNPEHHEDAEKIVSSVKNDIN 422
           P +++  T++ E HED +  V  +++D N
Sbjct: 24  PNNKKSRTRSTESHEDRQAKVQKIQSDFN 52


>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 325 IPGPRSIKSTKHRILNTTKMLKKSFLPSKMTLTQRK 432
           +P P S+    HR LN  K+    F P  +  T++K
Sbjct: 224 LPSPVSLSRYMHRSLNWKKLYDIGFAPFPLGSTEKK 259


>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 754

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 25/107 (23%), Positives = 44/107 (41%)
 Frame = +1

Query: 76  KVPEAEDKPLNVVENLSSEQELIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIKPSLK 255
           ++ E E     V++    E+EL      +K  +N ++    E+   P +   +  K    
Sbjct: 646 EIEELEPVVQKVLDEEKQERELKIAERDLKKGENIMKYGD-EIRSRPARTWFQSEKDKQA 704

Query: 256 SDLETLKCRMKMRKSRGL*SI*EIPGPRSIKSTKHRILNTTKMLKKS 396
           S     K +  + K +      E+P  R+ K TK+  L+  K  KKS
Sbjct: 705 SKASEAKDKKSLAKRKKQMEKEEVP--RAYKKTKNDRLSNKKSTKKS 749


>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/56 (26%), Positives = 23/56 (41%)
 Frame = +3

Query: 333 PPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQ 500
           PP H ++ TQ    HEDA+    S  + +    I  R  ++      G +    EQ
Sbjct: 609 PPLHLKNTTQTNNAHEDAQSSNLSQNHSLFYERIPQRPSYRIEKQNKGIYEDENEQ 664


>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
 Frame = +3

Query: 393 IVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQINELQASLQHFQENFGAQIQKL-N 569
           ++SS  N   + + A   G +++ D +       EQ+  L    +   E FG ++Q++  
Sbjct: 1   MISSFSNGFWSKDYAT--GVKKLFDCLDNGVEENEQVKNLLKLYKEANEEFGEKLQEITK 58

Query: 570 ETLHFIKPADTIAAPSVEETQNKASFETIES 662
           E L   KP +T        T NKA FE + S
Sbjct: 59  ECLKGKKPENT----EDGATSNKA-FEGLRS 84


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +3

Query: 492 TEQINELQASLQHFQENFGAQIQKLNETL 578
           + ++N+LQ   ++ +  F  QI+KLN  +
Sbjct: 111 SHEVNDLQTDRENLKHQFEDQIEKLNSEI 139


>SPBC244.02c |||U3 snoRNP-associated protein Utp6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 488

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = +3

Query: 438 LRQGFQEVSDGIGKWYARTEQINELQASLQHFQENFGAQIQKLNETLHFIK 590
           + Q   E+ D + K     ++IN +  + + F+E    +  KLN+ L +I+
Sbjct: 9   MEQSVPELEDLLEKNIFNRDEINNIIKTRRVFEEKLARRQVKLNDFLSYIQ 59


>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 199

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +1

Query: 328 PGPRSIKSTKHRILNTTKMLKKSFLPSKMTLTQRKSLFVKASRKCQTV 471
           P   +  + K  I   +K++  + LP+ +T  Q K LFVK+   C+ V
Sbjct: 39  PAVNTASALKSVISEESKIIVSN-LPTDVTEAQVKELFVKSIGPCKRV 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,399,518
Number of Sequences: 5004
Number of extensions: 46160
Number of successful extensions: 211
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)