Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0062
         (679 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.)                33   0.28 
SB_4772| Best HMM Match : Peptidase_U61 (HMM E-Value=3.1)              31   0.86 
SB_35532| Best HMM Match : Peptidase_S49 (HMM E-Value=2.7)             31   0.86 
SB_346| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   1.5  
SB_1305| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.8e-11)         29   2.6  
SB_49487| Best HMM Match : Zip (HMM E-Value=0.014)                     29   3.5  
SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14)        29   3.5  
SB_56545| Best HMM Match : Exonuc_X-T (HMM E-Value=1.2e-09)            29   3.5  
SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)                   29   3.5  
SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_59115| Best HMM Match : Spectrin (HMM E-Value=0)                    29   4.6  
SB_48596| Best HMM Match : Filament (HMM E-Value=0.23)                 28   8.0  
SB_20535| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_17221| Best HMM Match : Neur_chan_memb (HMM E-Value=1.5e-10)        28   8.0  
SB_12148| Best HMM Match : DUF827 (HMM E-Value=0.044)                  28   8.0  
SB_9721| Best HMM Match : Filament (HMM E-Value=0.2)                   28   8.0  
SB_1285| Best HMM Match : SET (HMM E-Value=0.011)                      28   8.0  

>SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1040

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 22/74 (29%), Positives = 41/74 (55%)
 Frame = +1

Query: 73  DKVPEAEDKPLNVVENLSSEQELIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIKPSL 252
           +KV E+ D  +  +EN     EL +Q   IK+ +  L+  +KE+  +  K+I  E+   L
Sbjct: 603 EKVNESRDDEITELEN-----ELEEQREIIKENEEKLKEKEKEIEKLKKKII--ELSDKL 655

Query: 253 KSDLETLKCRMKMR 294
           K D+ET + +++ +
Sbjct: 656 K-DMETSRNKVETK 668


>SB_4772| Best HMM Match : Peptidase_U61 (HMM E-Value=3.1)
          Length = 363

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
 Frame = +3

Query: 390 KIVSSVKNDINTAEIALRQGFQEVSDGIGKW----YARTEQINELQASLQHFQENFGAQI 557
           K   S  N+ +  ++    GF +V  G G W    Y   E +N  Q +L  F+++  A +
Sbjct: 43  KFTGSCTNESDVGQMRFDNGFLQVCTGTGGWRSMQYQGCEPLNVAQRNLDAFKKSSFAVL 102

Query: 558 QKLNETL 578
            + N+ L
Sbjct: 103 FQFNKNL 109


>SB_35532| Best HMM Match : Peptidase_S49 (HMM E-Value=2.7)
          Length = 149

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
 Frame = +1

Query: 64  SIPDKVPEAEDKPLNVVENLSSEQELIDQ-ANTIKDIDNSLRANKKEVVDIPVKVIVEEI 240
           SIP   P+ + K LN VEN++  +E  ++ A+ + D+ N + + K E     V   V+ +
Sbjct: 74  SIPLAKPQKQQKVLNAVENINWPEEKKERFADVLNDVHN-ISSEKSEEEGDGVVFFVKSL 132

Query: 241 KPSLKSDLETLK 276
           K + +++L  LK
Sbjct: 133 KWA-RNELRILK 143


>SB_346| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 652

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
 Frame = +3

Query: 327 PGPPQHQEHETQNPEHHEDAEKIVSSVKN---DINTAEIALRQGFQEVSDGIGKWYARTE 497
           P PP H + E     H E  E+I S  K+   D+  A+  L++  +++ + +G  Y R  
Sbjct: 282 PNPPPHLDEEKIKQLHEELKEEIKSMAKDSEKDLEDAKKDLKEEIEQIKEEVG--YLRYM 339

Query: 498 QINEL 512
           +  +L
Sbjct: 340 EAKQL 344


>SB_1305| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.8e-11)
          Length = 1491

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 30/102 (29%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
 Frame = +3

Query: 285 ENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVS 464
           ENE+I+   V LR+    Q +E +    E+  D E+ + S+K  +  AE   +   + ++
Sbjct: 259 ENEKIRLEHV-LRDR-ERQLKEKDRIIEENKADYEEDLKSLKELLRKAEEKSKSKMKAIN 316

Query: 465 DG----IGKWYARTEQINELQASLQHFQENFGAQIQKLNETL 578
           D     +    + +EQI+ L+A+LQH QE    ++++LN +L
Sbjct: 317 DYEIQILDFKSSFSEQISTLEAALQHEQEQ-KTRLEELNISL 357


>SB_49487| Best HMM Match : Zip (HMM E-Value=0.014)
          Length = 510

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/67 (22%), Positives = 28/67 (41%)
 Frame = +3

Query: 273 EVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGF 452
           +V   ++ I+     LR+     H ++   +  HH   +KI S          + +  GF
Sbjct: 49  DVSSGSDSIENEKFTLRDDHTDNHHQNHHDHHHHHHHDKKIDSKTSIATVAWMVIVSDGF 108

Query: 453 QEVSDGI 473
             +SDG+
Sbjct: 109 HNLSDGL 115


>SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14)
          Length = 1709

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 9/110 (8%)
 Frame = +3

Query: 264 RNVEV--PDENEEIKRPLV---DLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTA 428
           RN EV    + E+ ++ L    D   P   + QE E +N E  E  E+ +S +KN ++  
Sbjct: 630 RNQEVFEAQQKEQFEKQLSLVKDELQPYKSKCQELEQENKELMEKYERDLSELKNKMDEV 689

Query: 429 EIALRQGFQEVSDGIGKWYARTE----QINELQASLQHFQENFGAQIQKL 566
           E   +       +G+       +    ++ EL+   +   EN+GAQ++ +
Sbjct: 690 EERYKMTENIEEEGMKTLEHELQIYKAKVKELEDGNRMLVENYGAQLENM 739


>SB_56545| Best HMM Match : Exonuc_X-T (HMM E-Value=1.2e-09)
          Length = 416

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
 Frame = +1

Query: 154 NTIKDIDNS--LRANKKEVVDIPVKVIVEEIKPSLKSDLETLKCRMKMRKSRGL*SI*EI 327
           N +K + +S  +++ K  + D+PV   +EE       D   ++   K    RGL ++  +
Sbjct: 315 NFMKQMKHSQEVKSRKDTLCDLPVSSSMEEKIAKSGMDFNKMRSVYKEGGERGLLTVLAL 374

Query: 328 PGPRS---IKSTKHRILNTTKMLKK 393
           P   S   +K +K R+  T +++ K
Sbjct: 375 PPQYSQLNVKGSKPRVTKTIRIINK 399


>SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)
          Length = 3616

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 498 QINELQASLQHFQENFGAQIQKLNETLHFIKPADTIAAPSVEET 629
           QI+ELQA LQ+F +    +I      L  I+  +++   S+ +T
Sbjct: 559 QISELQAQLQNFMDICFEKIPSTQRALRLIRKFESLGLDSLRDT 602


>SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1906

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
 Frame = +3

Query: 270  VEVPDENEEIKRPLVDLRNPGPPQHQEHETQN---PEHHEDAEKI--VSSVKNDINTAEI 434
            +  PDE E +   + DL NP   +  E E Q+     + +D EKI  V S     N + I
Sbjct: 828  INSPDEREIVLSEIYDLDNPSDDEELETEIQDALETANEQDKEKILAVYSALRSPNLSGI 887

Query: 435  ALRQ 446
             L Q
Sbjct: 888  ELAQ 891


>SB_59115| Best HMM Match : Spectrin (HMM E-Value=0)
          Length = 1457

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +3

Query: 453 QEVSDGIGKWYARTEQINELQASLQHFQENFGAQIQKLNETLHFIKPADTIAAPSV 620
           +++ DG  +  +  E + +     + FQEN   Q QK+N   H +   +  AA +V
Sbjct: 605 EKIIDGAEELGSDMEAVRQQVEQHKKFQENLEQQQQKVNSLTHMVVVVEDNAAENV 660


>SB_48596| Best HMM Match : Filament (HMM E-Value=0.23)
          Length = 458

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
 Frame = +1

Query: 124 SSEQELIDQANTIKDIDNSLRANKKEVVDIPVKV-IVEEIKPSLKSDLETLKCRMKM 291
           SS ++LID    I+D ++S    +KE + +  +V  +E  K SL+  +  L+ ++K+
Sbjct: 152 SSRRDLIDAHRKIRDAEDSKETLRKENLHVKRQVKDLEMEKQSLEKSVSDLREKVKL 208


>SB_20535| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 220

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 7/31 (22%), Positives = 16/31 (51%)
 Frame = -1

Query: 586 IKCSVSFNFCI*APKFSWKCCKLAWSSLICS 494
           ++C + +   + +  F W CC + W  ++ S
Sbjct: 169 LRCFIGWRGIVTSSTFEWLCCFIVWREIVTS 199


>SB_17221| Best HMM Match : Neur_chan_memb (HMM E-Value=1.5e-10)
          Length = 624

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -1

Query: 538 SWKCCKLAWSSLICSVRAYHFPIPSDTSWK 449
           SW+   + W S++ S +++   + SD SW+
Sbjct: 107 SWQSMVVQWQSMVVSDKSWQSMVVSDKSWQ 136


>SB_12148| Best HMM Match : DUF827 (HMM E-Value=0.044)
          Length = 933

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 109 VVENLSSEQELIDQANTIKDIDNSLRANKKEVVD 210
           V E + S++E+ D  N +KD+ +S+   KK+  D
Sbjct: 302 VKEAMPSKKEIPDMRNNLKDLKSSINEVKKQTDD 335


>SB_9721| Best HMM Match : Filament (HMM E-Value=0.2)
          Length = 216

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +1

Query: 106 NVVENLSSEQELIDQANTIKDIDNSLRANKKEVVDIPVKVI-VEEIKPSLKSDLETLKCR 282
           N+ + L   +  +DQAN IKD    L +  K + D   K+I ++  K  L  + + LK R
Sbjct: 87  NLTKQLKQAKLELDQANKIKDDYEKLNSKTKSLED---KIIYLDATKRQLPKEKDELKSR 143

Query: 283 M 285
           +
Sbjct: 144 V 144


>SB_1285| Best HMM Match : SET (HMM E-Value=0.011)
          Length = 829

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +3

Query: 264 RNVEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAE-KIVSSVKNDI 419
           +   V +  EE+ R LV L   GPP   +  T+ P   E     ++S VK ++
Sbjct: 554 KKYSVAEFREELVRQLVGLEEFGPPPAHKPPTRAPNQFETVHMPMMSDVKRNL 606


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,936,244
Number of Sequences: 59808
Number of extensions: 339959
Number of successful extensions: 1314
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1312
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)