Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0062
(679 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g61390.2 68416.m06872 U-box domain-containing protein several... 32 0.40
At1g66170.1 68414.m07511 PHD finger family protein (MMD1) contai... 32 0.40
At2g30780.1 68415.m03753 pentatricopeptide (PPR) repeat-containi... 31 0.53
At5g65910.1 68418.m08296 BSD domain-containing protein contains ... 31 0.70
At3g12980.1 68416.m01617 histone acetyltransferase 5 (HAC5) iden... 31 0.70
At1g51070.1 68414.m05741 basic helix-loop-helix (bHLH) family pr... 30 1.2
At1g03830.1 68414.m00364 guanylate-binding family protein contai... 30 1.6
At5g60800.1 68418.m07628 heavy-metal-associated domain-containin... 29 2.8
At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family pr... 29 2.8
At1g50750.1 68414.m05707 expressed protein 29 2.8
At5g29624.1 68418.m03640 DC1 domain-containing protein contains ... 29 3.7
At3g05110.1 68416.m00555 hypothetical protein 29 3.7
At2g30410.1 68415.m03704 tubulin folding cofactor A (KIESEL) ide... 29 3.7
At1g12380.1 68414.m01431 expressed protein 29 3.7
At5g35604.1 68418.m04242 hypothetical protein 28 4.9
At3g28600.1 68416.m03570 AAA-type ATPase family protein contains... 28 4.9
At3g04010.1 68416.m00422 glycosyl hydrolase family 17 protein si... 28 4.9
At1g68210.1 68414.m07792 two-component responsive regulator fami... 28 4.9
At5g42880.1 68418.m05226 hypothetical protein contains Pfam prof... 28 6.5
At4g37910.1 68417.m05361 heat shock protein 70, mitochondrial, p... 28 6.5
At4g03430.1 68417.m00470 pre-mRNA splicing factor-related simila... 28 6.5
At3g54670.1 68416.m06049 structural maintenance of chromosomes (... 28 6.5
At3g15920.1 68416.m02013 phox (PX) domain-containing protein wea... 28 6.5
At5g54050.1 68418.m06722 DC1 domain-containing protein 27 8.6
At5g49430.1 68418.m06116 transducin family protein / WD-40 repea... 27 8.6
At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almos... 27 8.6
At1g56660.1 68414.m06516 expressed protein 27 8.6
>At3g61390.2 68416.m06872 U-box domain-containing protein several
hypothetical proteins - Arabidopsis thaliana
Length = 435
Score = 31.9 bits (69), Expect = 0.40
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Frame = +3
Query: 255 E*FRNVEVPDENEEIKRPLVDLRN-PGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAE 431
E FR + +E EE+K L ++ G + +E T N H E + + + +DI
Sbjct: 314 ETFRGIR--EEQEELKIKLREVSKLKGKREEEEASTSN--HREPPQYFICPITHDIMEDP 369
Query: 432 IALRQGFQEVSDGIGKWYARTEQINEL 512
GF + I +W+ R + + +
Sbjct: 370 HVAADGFTYEGEAISRWFERGHETSPM 396
>At1g66170.1 68414.m07511 PHD finger family protein (MMD1) contains
Pfam profile: PF00628: PHD-finger
Length = 704
Score = 31.9 bits (69), Expect = 0.40
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -1
Query: 529 CCKLAWSSLICSVRAYHFPIPSDTSW 452
C WS+ S R YHF IP DT W
Sbjct: 95 CRCTGWSNHFVSKRKYHFIIPIDTEW 120
>At2g30780.1 68415.m03753 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 452
Score = 31.5 bits (68), Expect = 0.53
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +3
Query: 357 TQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYART 494
T P HH D + VS +K+++ T + ++ FQ V D G+W RT
Sbjct: 20 TSLPAHHTDLVQRVSILKDELLTIGNS-KEKFQNVLDQKGQWLFRT 64
>At5g65910.1 68418.m08296 BSD domain-containing protein contains
Pfam profile PF03909: BSD domain
Length = 432
Score = 31.1 bits (67), Expect = 0.70
Identities = 13/52 (25%), Positives = 23/52 (44%)
Frame = +3
Query: 318 LRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGI 473
L P + Q P+H E+ E +++ +KND R G ++S +
Sbjct: 64 LSQPSSSPDLQERNQTPDHPEEDEDLIAGIKNDFAEIGGRFRTGISKLSGNL 115
>At3g12980.1 68416.m01617 histone acetyltransferase 5 (HAC5)
identical to HAC5 (GI:21105780) [Arabidopsis thaliana];
similar to CREB-binding protein GB:S39162 from [Homo
sapiens]
Length = 1670
Score = 31.1 bits (67), Expect = 0.70
Identities = 13/46 (28%), Positives = 27/46 (58%)
Frame = +3
Query: 435 ALRQGFQEVSDGIGKWYARTEQINELQASLQHFQENFGAQIQKLNE 572
+L G Q VS G+G+W++ ++ + + + +E+FG + K +E
Sbjct: 524 SLSAGVQPVS-GLGQWHSSSQNLTPISKNSNEEREHFGVRFHKQHE 568
>At1g51070.1 68414.m05741 basic helix-loop-helix (bHLH) family
protein similar to bHLH transcription factor GI:3757520
from [Arabidopsis thaliana]
Length = 226
Score = 30.3 bits (65), Expect = 1.2
Identities = 22/96 (22%), Positives = 48/96 (50%)
Frame = +1
Query: 70 PDKVPEAEDKPLNVVENLSSEQELIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIKPS 249
P + P+ DK + + + + D+A +KD+++SL+ KE+ D K + + K
Sbjct: 95 PGRTPKT-DKVAIINDAIRMVNQARDEAQKLKDLNSSLQEKIKELKD--EKNELRDEKQK 151
Query: 250 LKSDLETLKCRMKMRKSRGL*SI*EIPGPRSIKSTK 357
LK + E + ++K K++ +P P+++ +
Sbjct: 152 LKVEKERIDQQLKAIKTQPQPQPCFLPNPQTLSQAQ 187
>At1g03830.1 68414.m00364 guanylate-binding family protein contains
Pfam domains PF02263: Guanylate-binding protein,
N-terminal domain and PF02841: Guanylate-binding
protein, C-terminal domain
Length = 991
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/64 (28%), Positives = 33/64 (51%)
Frame = +1
Query: 109 VVENLSSEQELIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIKPSLKSDLETLKCRMK 288
V E +++ +E + QA+T +D LRA V+D K+I E+ + + R +
Sbjct: 536 VTEKIAAMEEKLKQASTTED---GLRAEFSRVLDEKEKIITEKAAKLATLEQQLASTRAE 592
Query: 289 MRKS 300
++KS
Sbjct: 593 LKKS 596
>At5g60800.1 68418.m07628 heavy-metal-associated domain-containing
protein similar to farnesylated protein ATFP3
[GI:4097547]; contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 283
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = +3
Query: 270 VEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDIN 422
V++ ++ EE + VDL +P P + +E E +N ++ ED +K K D N
Sbjct: 74 VKLREKLEEKTKKKVDLVSPQPKKEKEKENKN-KNDEDKKKSEEKKKPDNN 123
>At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 284
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = +1
Query: 94 DKPLNVVENLSSEQELIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIKPSLKSDLETL 273
DK + + + +EL + N +K +L +E+ K + E K SLKSD+E L
Sbjct: 40 DKATILTDTVQLLKELTSEVNKLKSEYTALTDESRELTQ--EKNDLREEKTSLKSDIENL 97
Query: 274 KCRMKMR 294
+ + R
Sbjct: 98 NLQYQQR 104
>At1g50750.1 68414.m05707 expressed protein
Length = 816
Score = 29.1 bits (62), Expect = 2.8
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Frame = +3
Query: 285 ENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSV--KNDINTAEIALRQGFQE 458
E E++ + N P HQ+H T+ E + S V D + +IA+ +G Q
Sbjct: 670 EKEDVVADDDTMNNIEPVPHQQHATRGTNRDETSRACKSVVLSPTDESNIQIAVGEGSQG 729
Query: 459 VSDGI---GKWYARTEQINELQASLQHFQENFG 548
G+ G T + NE L+ + +FG
Sbjct: 730 QDCGLQDNGLGSDETSKSNEQLEDLEKRKNDFG 762
>At5g29624.1 68418.m03640 DC1 domain-containing protein contains
Pfam PF03107: DC1 domain
Length = 488
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +3
Query: 273 EVPDENEEIKRPLVDLRNPGPPQHQEHE 356
+VPDE EEIK P + G H HE
Sbjct: 264 DVPDEEEEIKDPFKVINENGDIVHISHE 291
>At3g05110.1 68416.m00555 hypothetical protein
Length = 372
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = +3
Query: 360 QNPEHHEDAEKIVSSVKNDINTAEIALRQG----FQEVSDGIGKWYARTEQINELQASLQ 527
+N E HE +V S ND + G + D + + Y R +++N+ Q+SLQ
Sbjct: 150 ENDEDHEPVMCVVDSEFNDFRKTMSSFMAGQVWALYDGIDSMPRCYGRIKKVNKCQSSLQ 209
>At2g30410.1 68415.m03704 tubulin folding cofactor A (KIESEL)
identical to cDNA tubulin folding cofactor A,
GI:20514256, SP|O04350 Tubulin-specific chaperone A
(Tubulin-folding cofactor A) (CFA) (TCP1-chaperonin
cofactor A homolog) {Arabidopsis thaliana}
Length = 113
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = +3
Query: 276 VPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAE 431
+PD ++ ++ L DL++ + E + PE EDA+K V+ V+ T +
Sbjct: 62 IPDCHKRLESALADLKSTLAELEETDEKEGPE-IEDAKKTVADVEKQFPTED 112
>At1g12380.1 68414.m01431 expressed protein
Length = 793
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/68 (25%), Positives = 35/68 (51%)
Frame = +3
Query: 306 PLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWY 485
PL +R+ + +PE +D +K+++ + + + A IAL + + ++G+ Y
Sbjct: 609 PLYLIRDSSGKYLPPFKCLSPEQEKDVDKLITRLVSR-DEAHIALMELMKWRTEGLDPMY 667
Query: 486 ARTEQINE 509
AR Q+ E
Sbjct: 668 ARAVQMKE 675
>At5g35604.1 68418.m04242 hypothetical protein
Length = 298
Score = 28.3 bits (60), Expect = 4.9
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 44 CSPHAQPPSRTRSPRPKI 97
CSP PPSRT P P +
Sbjct: 92 CSPRLSPPSRTMGPPPPV 109
>At3g28600.1 68416.m03570 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 475
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 67 IPDKVPEAEDKPLNVVENLSSEQELIDQANTIKDIDNSLRANKK 198
I + E + P +V ENL + ID ++KD+ +L KK
Sbjct: 405 IESLLKETKIAPADVAENLMKKNTEIDADGSLKDLIQALEGKKK 448
>At3g04010.1 68416.m00422 glycosyl hydrolase family 17 protein
similar to beta-1,3-glucanase GB:S12402 [Nicotiana sp],
GB:CAA03908 [Citrus sinensis], GB:S44364 [Lycopersicon
esculentum]
Length = 491
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -3
Query: 533 EMLQAGLELVNLLGTS-VPFSNTV*HFLEALTKSDFRCVNVIFDGRN 396
+++Q ++VN L + PF+ + FL SDF FDG+N
Sbjct: 189 DIIQEMTQIVNFLAQNKAPFTVNIYPFLSLYLSSDFPFEYAFFDGQN 235
>At1g68210.1 68414.m07792 two-component responsive regulator family
protein / response regulator family protein contains
Pfam profile: PF00072 response regulator receiver domain
Length = 663
Score = 28.3 bits (60), Expect = 4.9
Identities = 21/71 (29%), Positives = 32/71 (45%)
Frame = +1
Query: 85 EAEDKPLNVVENLSSEQELIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIKPSLKSDL 264
+ K L+++E E LI + ID+ N + DIP+ +I EIK SDL
Sbjct: 43 DVASKALSMIEKQKKEIGLIIANIEMPHIDSHSFLNALLLKDIPLILINPEIKTKEPSDL 102
Query: 265 ETLKCRMKMRK 297
T + + K
Sbjct: 103 LTKRACFSLDK 113
>At5g42880.1 68418.m05226 hypothetical protein contains Pfam profile
PF05701: Plant protein of unknown function (DUF827)
Length = 751
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +3
Query: 408 KNDINTAEIALRQGFQEVSDGIGKWYARTEQINELQASLQHFQENFGAQIQKLNET 575
KNDI+ A + R+ +EV I K + +++ + SL Q G + Q L ET
Sbjct: 411 KNDIHAAVESARRELEEVKANIEKAASEVKKLKIIAGSL---QSELGRERQDLEET 463
>At4g37910.1 68417.m05361 heat shock protein 70, mitochondrial,
putative / HSP70, mitochondrial, putative strong
similarity to SP|Q01899 Heat shock 70 kDa protein,
mitochondrial precursor {Phaseolus vulgaris}
Length = 682
Score = 27.9 bits (59), Expect = 6.5
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Frame = +3
Query: 264 RNVEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALR 443
+ E+ + ++ K+ L+DLRN E E+ EKI + + ++I TA LR
Sbjct: 561 KEAELNAQKDQEKKQLIDLRNSADTTIYSVEKSLSEYR---EKIPAEIASEIETAVSDLR 617
Query: 444 QGF--QEVSDGIGKWYARTEQINEL 512
++V D K A + ++++
Sbjct: 618 TAMAGEDVEDIKAKVEAANKAVSKI 642
>At4g03430.1 68417.m00470 pre-mRNA splicing factor-related similar
to pre-mRNA splicing factor pre-mRNA splicing factor
prp1 (SP:Q12381) [Fission yeast]
Length = 1029
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +3
Query: 399 SSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQINELQASL 524
+ +++D+ LR+G + + D + W A E NE A +
Sbjct: 458 AKLEHDVENKSRVLRKGLEHIPDSVRLWKAVVELANEEDARI 499
>At3g54670.1 68416.m06049 structural maintenance of chromosomes (SMC)
family protein similar to SMC1 protein [Bos taurus]
GI:4235253, 14S cohesin SMC1 subunit (SMC protein)
[Xenopus laevis] GI:3328231; contains Pfam profiles
PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1257
Score = 27.9 bits (59), Expect = 6.5
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Frame = +1
Query: 64 SIPDKVPEAEDKPLNVVENLSSEQELIDQANTIKDID------NSLRANKKEVVDIPVKV 225
SI DK+P+ E + N++E + + + +A ++D N L E+VD K
Sbjct: 746 SIKDKLPQLEQEERNIIEEIDRIKPELSKAIARTEVDKRKTEMNKLEKRMNEIVDRIYKD 805
Query: 226 IVEEI-KPSLKSDLET-LKCRMKMRKSR 303
+ + P+++ ET LK K + R
Sbjct: 806 FSQSVGVPNIRVYEETQLKTAEKEAEER 833
>At3g15920.1 68416.m02013 phox (PX) domain-containing protein weak
similarity to myosin heavy chain [Rana catesbeiana]
GI:4249699; contains Pfam profile PF00787: PX domain
Length = 755
Score = 27.9 bits (59), Expect = 6.5
Identities = 24/92 (26%), Positives = 44/92 (47%)
Frame = +3
Query: 267 NVEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQ 446
N + EN+ + + + D+R H+EHE + + + +V VK+ + T + LR
Sbjct: 526 NESLVQENQMLLQQINDIRENFENFHKEHEELEVKAKAELKVLVKEVKS-LRTTQSDLR- 583
Query: 447 GFQEVSDGIGKWYARTEQINELQASLQHFQEN 542
QE+S GI K E+I + + + +N
Sbjct: 584 --QELS-GIMKEKLEMERIVQREKDREETAKN 612
>At5g54050.1 68418.m06722 DC1 domain-containing protein
Length = 580
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 273 EVPDENEEIKRPLVDLRNPGPPQHQEHE 356
+VP+E EEIK P + G H HE
Sbjct: 276 DVPEEEEEIKDPFKVINEKGDIVHFSHE 303
>At5g49430.1 68418.m06116 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 9 (SP:Q9NSI6)
{Homo sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (4 copies)
Length = 1677
Score = 27.5 bits (58), Expect = 8.6
Identities = 20/61 (32%), Positives = 31/61 (50%)
Frame = +1
Query: 88 AEDKPLNVVENLSSEQELIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIKPSLKSDLE 267
A+DK N +N++ +LID ++ I +L+ K V P + +E K SL D E
Sbjct: 1129 ADDKASNSSQNVTHRHDLID---SLPPISTTLKIRSKRVSRAPDTSLRQEGK-SLSIDQE 1184
Query: 268 T 270
T
Sbjct: 1185 T 1185
>At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almost
identical to CIP1 (GI:836950) [Arabidopsis thaliana]
Length = 1305
Score = 27.5 bits (58), Expect = 8.6
Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Frame = +3
Query: 360 QNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQINELQASLQHFQE 539
Q E H E+ + S++ DI+ EI R S+ + + +Q+++L ASL+ +E
Sbjct: 126 QLKESHSVKERELFSLR-DIH--EIHQRDSSTRASELEAQLESSKQQVSDLSASLKAAEE 182
Query: 540 NFGAQIQKLNETLHFIKPA-DTIAAPSVEETQNKASFETIESGLKSL 677
A K ET++ ++ +TI E + K S ES L SL
Sbjct: 183 ENKAISSKNVETMNKLEQTQNTIQELMAELGKLKDSHREKESELSSL 229
>At1g56660.1 68414.m06516 expressed protein
Length = 522
Score = 27.5 bits (58), Expect = 8.6
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Frame = +1
Query: 82 PEAEDKPLNVVENLSSEQELIDQANTIKD---IDNSLRANKKE-VVDIPVKVIVEEIKPS 249
PE ED+ E+ ++EQE+ D+A K+ N +A KKE V+D +V +E K
Sbjct: 295 PEKEDEGKKTKEHDATEQEMDDEAADHKEGKKKKNKDKAKKKETVID---EVCEKETKDK 351
Query: 250 LKSDLETLKCRMKMRKSR 303
+ ET + + K ++ +
Sbjct: 352 DDDEGETKQKKNKKKEKK 369
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,606,691
Number of Sequences: 28952
Number of extensions: 243056
Number of successful extensions: 1085
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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