Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0060
         (696 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    24   1.0  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   4.2  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   4.2  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    22   5.5  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    21   7.3  

>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = -3

Query: 535 TRQCPKVKQKIY--FHKDVTSDWE 470
           TR    + Q+ Y  F+K +T+DWE
Sbjct: 287 TRNADDISQEEYGEFYKSLTNDWE 310


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 349 PPHRTWSRLVAAVGLKRAPRY 287
           PP++  S+   ++GL R P Y
Sbjct: 145 PPYQLDSKTAGSMGLTRPPMY 165


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 349 PPHRTWSRLVAAVGLKRAPRY 287
           PP++  S+   ++GL R P Y
Sbjct: 37  PPYQLDSKTAGSMGLTRPPMY 57


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 212 LLDKGCVKREMAPFWS 165
           +LD G +KRE +P+ S
Sbjct: 328 MLDLGVIKREASPYAS 343


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 403 LIVCISYYPI*NKPKYK 353
           L++C SY  I +K KY+
Sbjct: 19  LLICDSYLKIYHKEKYR 35


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,290
Number of Sequences: 336
Number of extensions: 4138
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)