Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0060
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    28   1.5  
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    27   3.4  
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc...    26   4.5  
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M...    26   4.5  

>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = +2

Query: 227 EHGVQSSLFTAPLCRQRCSTVSGCT--LKPHRRDKARPRSVGGEFILRFILDWVIRN 391
           +HG+++SL  AP+     S + G     +P+  +  + R + GEF  + +  W++++
Sbjct: 589 KHGIRNSLLVAPMPTASTSQILGFNECFEPYTSNMYQRRVLSGEF--QIVNPWLLKD 643


>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/42 (26%), Positives = 24/42 (57%)
 Frame = +2

Query: 404 RLNYLVSQVVTYIIVHNVVLIPFPVGGNIFVKINLLFDFWAL 529
           R+   VS ++ +I+V   +++P P+ G+ ++   L F  W +
Sbjct: 555 RIGIFVSWIIFFILV---IIVPLPMYGSKYIFSKLFFRGWII 593


>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1106

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
 Frame = -3

Query: 520  KVKQKIYFHKDVTSDWEWN*HN---IMYNNISNHLTNEVIK 407
            +VK+ I  + ++  +  W  H+   I Y ++SNHL+ E++K
Sbjct: 979  EVKRIIQRNANLEFEAIWKGHSENKIPYTSLSNHLSTEIVK 1019


>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1317

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 19/60 (31%), Positives = 22/60 (36%)
 Frame = +1

Query: 160 RRLQKGAISRFTHPLSSKGGKTGTRCAVLFVHGTPVQTTLLHGIGVHA*APPPRQGETTF 339
           RR   G  S F H L +K    G RC  +   G  V      G+  HA    P  G   F
Sbjct: 254 RRYLAGFQSGFLHGLKTKDNSKGVRCEFMQSDGGLVDVNKFSGL--HAILSGPAGGVVGF 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,069,579
Number of Sequences: 5004
Number of extensions: 66965
Number of successful extensions: 139
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)