Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0060
(696 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0001 + 40324322-40324737,40325921-40326051,40326872-40327563 29 2.7
08_01_0433 + 3794440-3794948,3795696-3796707 29 3.5
07_03_1394 + 26254438-26254950 29 3.5
05_07_0278 + 28911722-28911934,28912154-28913055,28913142-289135... 29 3.5
11_06_0305 + 22209640-22209736,22212679-22212941,22213444-222135... 28 6.2
03_02_0123 + 5745390-5745576,5745993-5746082,5746255-5746351,574... 28 6.2
01_06_1104 - 34551466-34551572,34552019-34553057 28 6.2
09_04_0654 - 19247051-19247305,19247466-19247534,19247618-192477... 28 8.1
04_04_1353 - 32836301-32836340,32836514-32836657,32836948-328370... 28 8.1
02_05_0977 - 33239887-33240566,33241010-33241985 28 8.1
>01_07_0001 + 40324322-40324737,40325921-40326051,40326872-40327563
Length = 412
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Frame = +2
Query: 179 PSPASRTLCPAKVGKREHGVQSSLFTAPLCR-QRCST-VSGCTLKPHRRDK 325
P PAS + A GKR Q P C + C+ +S C HRR K
Sbjct: 63 PPPASSSSSAAAAGKRARAGQGQQAAVPACSVEGCAADLSKCVRDYHRRHK 113
>08_01_0433 + 3794440-3794948,3795696-3796707
Length = 506
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Frame = +2
Query: 158 QDGSRREPSPASRTLCPAKVG-KREHGVQSSLFTAPLCRQRCSTVSGCTLKPHRRDKARP 334
Q RR SPA+ AK+ S + P R RC G PHRR++
Sbjct: 62 QAEERRASSPAAHEAHEAKLHLSPSRATLSMVVPLPRARCRCVVYVGNIALPHRREREMR 121
Query: 335 RSVGGE 352
+ GE
Sbjct: 122 KGEKGE 127
>07_03_1394 + 26254438-26254950
Length = 170
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 2 CPPVHFSSTWGLPLLT 49
CP + FSS WGLP+L+
Sbjct: 115 CPTIVFSSQWGLPVLS 130
>05_07_0278 +
28911722-28911934,28912154-28913055,28913142-28913581,
28913628-28913955,28914101-28914743
Length = 841
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 236 VQSSLFTAPLCRQRCSTVSGCTLKP 310
V S+ F PL R CS V GC ++P
Sbjct: 464 VSSTGFVTPLRRPHCSKVHGCKIQP 488
>11_06_0305 +
22209640-22209736,22212679-22212941,22213444-22213530,
22214866-22214937,22215729-22215793,22215918-22216050,
22216397-22216477,22216599-22216688,22217954-22218103
Length = 345
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 129 KSCRGHGLAFKTAPEGSHLPLHAPFVQQ 212
+S +GH L F AP+ P H P QQ
Sbjct: 311 QSAQGHALQFTIAPDSPATPQHEPQQQQ 338
>03_02_0123 +
5745390-5745576,5745993-5746082,5746255-5746351,
5746446-5746584
Length = 170
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 236 VQSSLFTAPLCRQRCSTVSGCTLKPHR 316
V +S TAP CR RCS + T P +
Sbjct: 8 VAASPVTAPRCRGRCSAATAATSAPEK 34
>01_06_1104 - 34551466-34551572,34552019-34553057
Length = 381
Score = 28.3 bits (60), Expect = 6.2
Identities = 28/76 (36%), Positives = 33/76 (43%)
Frame = +2
Query: 122 AAKKLPGTWPSIQDGSRREPSPASRTLCPAKVGKREHGVQSSLFTAPLCRQRCSTVSGCT 301
AAK LP T P+ D S R L P + G SS +A L R R + SG +
Sbjct: 8 AAKFLPATAPTHLDSSPR--------LSPPRAGSLSFSPLSSSSSALLLRLRSPSPSGPS 59
Query: 302 LKPHRRDKARPRSVGG 349
P R PRS GG
Sbjct: 60 -GPGGRLPPPPRSYGG 74
>09_04_0654 -
19247051-19247305,19247466-19247534,19247618-19247705,
19248010-19248105,19248650-19248763,19248852-19248985,
19249880-19250326
Length = 400
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +2
Query: 314 RRDKARPRSVGGEFILRFILDWVIRNTNYKRLNYLVSQVVTYIIVH 451
RRD GE I R WV+ N N +RL + V + VH
Sbjct: 213 RRDWILKDLANGEVIGRATSKWVMMNQNTRRLQRVSDDVRDEVFVH 258
>04_04_1353 -
32836301-32836340,32836514-32836657,32836948-32837023,
32838281-32838351,32838552-32838623,32839347-32839474,
32839561-32839637,32839712-32839805,32840239-32840324,
32840836-32840911,32841004-32841318
Length = 392
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 163 RLQKGAISRFTHPLSSKGGKTGTRCAVLFVHGTPVQT 273
R++ G + F S G + GT V+F+HG P Q+
Sbjct: 117 RVKSGKLRWFVRETGSAGARRGT---VVFIHGAPSQS 150
>02_05_0977 - 33239887-33240566,33241010-33241985
Length = 551
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = +1
Query: 181 ISRFTHPLSSKGGKTGTRCAVLFVHGTPVQTTLLHGIGVHA*APPPRQGETTFGGGG 351
+++ L S T AV+ + G+ T++ I PPP T GGGG
Sbjct: 211 VTKHDRHLLSSPASTIAPDAVVALDGSGTHTSISDAIAAVTAPPPPAHHPTASGGGG 267
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,390,539
Number of Sequences: 37544
Number of extensions: 501495
Number of successful extensions: 1270
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1270
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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