Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0060
         (696 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11417| Best HMM Match : zf-TAZ (HMM E-Value=0.91)                   33   0.22 
SB_8902| Best HMM Match : DUF1070 (HMM E-Value=0.76)                   33   0.22 
SB_58248| Best HMM Match : Pox_A32 (HMM E-Value=0.97)                  29   2.7  
SB_3796| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.6  
SB_35285| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_44989| Best HMM Match : PAN (HMM E-Value=0.0058)                    28   6.3  
SB_25170| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_11417| Best HMM Match : zf-TAZ (HMM E-Value=0.91)
          Length = 390

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 22/46 (47%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
 Frame = +2

Query: 173 REPSPA-SRTLCPAKVGKREHGVQSSL--FTAPLCRQRCST-VSGC 298
           REPS   S   CPA VG+R   + SS+  F A +CRQ  +T VS C
Sbjct: 35  REPSQRQSGHTCPAYVGRRNASISSSVMCFAAIMCRQCIATGVSVC 80


>SB_8902| Best HMM Match : DUF1070 (HMM E-Value=0.76)
          Length = 544

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 22/46 (47%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
 Frame = +2

Query: 173 REPSPA-SRTLCPAKVGKREHGVQSSL--FTAPLCRQRCST-VSGC 298
           REPS   S   CPA VG+R   + SS+  F A +CRQ  +T VS C
Sbjct: 154 REPSQRQSGHTCPAYVGRRNASISSSVMCFAAIMCRQCIATGVSVC 199


>SB_58248| Best HMM Match : Pox_A32 (HMM E-Value=0.97)
          Length = 540

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
 Frame = +2

Query: 314 RRDKARPRSVG--GEFILRFILDWVIRNTNYKRLNYLVSQVVTYIIVHNVVLIPFPVGGN 487
           RR+ + PR +   G+ +  F+    +R   Y+RL  LV  +V  ++V +V+  P   GG 
Sbjct: 330 RRENSTPRGLSPLGQRV-DFLRPHFLR---YERLKQLVFDIVGEVLVQDVLDQPCQYGGR 385

Query: 488 IFVK 499
           +FV+
Sbjct: 386 LFVR 389


>SB_3796| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1051

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +2

Query: 284 TVSGCTLKPHRRDKARPRSVGGEFILRFILDWVIRNTNYKRLNYLVSQVVTYI 442
           T   C   P  RD  +  ++GGEF+     DW + +T ++R  + +S    Y+
Sbjct: 763 TAPECLPSPWSRDNHQGNAIGGEFMK---YDWHVPDTPHERCVFRISLFWGYV 812


>SB_35285| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 561

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +2

Query: 353 FILRFILDWVIRNTNYKRLNYLVSQVVTYIIVHNVVLIPFPVGGNIFVKINLL 511
           FI     + ++ N N  R   ++SQV+   I HN V+  +P+  N    + +L
Sbjct: 180 FIFGMDSERLLNNVNRLRKVGIMSQVIGQAITHNAVIAVYPLTDNAVEVLRVL 232


>SB_44989| Best HMM Match : PAN (HMM E-Value=0.0058)
          Length = 186

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 230 HGVQSSLFTAPLCRQRCSTVSGCTLKPHRRDKARPRSVG 346
           H +++ + T   CRQRC   SGC    ++  K   R  G
Sbjct: 37  HVIETKITTKEECRQRCKRNSGCYSINYKYKKCLMRKDG 75


>SB_25170| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 168

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 398 YKRLNYLVSQVVTYIIVHNVVLIPFPVGGNIFV 496
           Y+RL  LV  +V  ++V +V+  P   GG +FV
Sbjct: 16  YERLKQLVFDIVGDVLVQDVLDQPCQYGGRLFV 48


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,580,069
Number of Sequences: 59808
Number of extensions: 532230
Number of successful extensions: 1444
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1441
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)