Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0060
         (696 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB107036-1|BAC92750.1| 5061|Homo sapiens epiplakin protein.            31   3.0  
AB051895-1|BAB40803.1| 5065|Homo sapiens epiplakin 1 protein.          31   3.0  
AB065783-1|BAC06003.1|  328|Homo sapiens seven transmembrane hel...    30   6.9  

>AB107036-1|BAC92750.1| 5061|Homo sapiens epiplakin protein.
          Length = 5061

 Score = 31.5 bits (68), Expect = 3.0
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
 Frame = +2

Query: 125  AKKLPGTWPSIQDGSR--REPSPASRTLCPAKVGKRE-HGVQSSLFTAPLCRQRCSTVSG 295
            A++ PG  P +QD  R  REP PA R    +   +RE  G   +   A   R++  T+  
Sbjct: 2553 AEEAPGARPQLQDARRGPREPGPAGRGDGDSGRSQREGQGEGETQEAAAAARRQEQTLRD 2612

Query: 296  CTLKPHR-RDKARPRSV 343
             T++  R + + RP SV
Sbjct: 2613 ATMEVQRGQFQGRPVSV 2629


>AB051895-1|BAB40803.1| 5065|Homo sapiens epiplakin 1 protein.
          Length = 5065

 Score = 31.5 bits (68), Expect = 3.0
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
 Frame = +2

Query: 125  AKKLPGTWPSIQDGSR--REPSPASR----TLCPAKVGKREHGVQSSLFTAPLCRQRCST 286
            A++ PG  P +QD  R  REP PA R    +    + G+ E   Q +   A   R++  T
Sbjct: 2553 AEEAPGARPQLQDARRGPREPGPAGRGDGDSGRSQREGQGEGETQEAAAAAAAARRQEQT 2612

Query: 287  VSGCTLKPHR-RDKARPRSV 343
            +   T++  R + + RP SV
Sbjct: 2613 LRDATMEVQRGQFQGRPVSV 2632


>AB065783-1|BAC06003.1|  328|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 328

 Score = 30.3 bits (65), Expect = 6.9
 Identities = 19/54 (35%), Positives = 31/54 (57%)
 Frame = -1

Query: 678 GMLMFGAIMCIPYLENVISGI*VFSNIFFTMRIPRLNFLLYHNY*KDILDNAQK 517
           G ++F  + C+P  +N    + V S +F+T+ IP LN L+Y    KD+ D  +K
Sbjct: 255 GTILF--LYCVPNSKNSRHTVKVAS-VFYTVVIPLLNPLIYSLRNKDVKDAIRK 305


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,788,638
Number of Sequences: 237096
Number of extensions: 2718447
Number of successful extensions: 5337
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5336
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8007229802
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)