Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0060
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067216-11|AAL02458.1|  707|Caenorhabditis elegans Hypothetical...    33   0.26 
Z92797-2|CAB07236.1|  425|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z69792-1|CAB61002.1|  605|Caenorhabditis elegans Hypothetical pr...    29   4.2  
D85744-1|BAA12861.1|  605|Caenorhabditis elegans HCH-1 protein.        29   4.2  
Z82079-1|CAB04949.1| 1529|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z80344-7|CAB02491.1| 1529|Caenorhabditis elegans Hypothetical pr...    28   5.5  

>AF067216-11|AAL02458.1|  707|Caenorhabditis elegans Hypothetical
           protein C35E7.2a protein.
          Length = 707

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 19/48 (39%), Positives = 28/48 (58%)
 Frame = -3

Query: 550 LLERHTRQCPKVKQKIYFHKDVTSDWEWN*HNIMYNNISNHLTNEVIK 407
           LL  +T+ CP V QKIYF K   S+   + H ++ N ++ H   E+IK
Sbjct: 170 LLLLNTKICPHVSQKIYFCKTTKSE---SVHQVVLNKLTLHF--EIIK 212


>Z92797-2|CAB07236.1|  425|Caenorhabditis elegans Hypothetical
           protein H25P06.4 protein.
          Length = 425

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -1

Query: 327 ALSRRWGLSVHPDTVEQRCLHRGAVNKEDCTPCSRFPTF 211
           A+ + WG +  PD   Q+ L R  ++   C P ++ P F
Sbjct: 257 AVEKNWGSN--PDKPNQKTLKRSTISDNSCEPVAKKPEF 293


>Z69792-1|CAB61002.1|  605|Caenorhabditis elegans Hypothetical
           protein F40E10.1 protein.
          Length = 605

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -1

Query: 273 CLHRGAVNKEDCTPCSRFPTFAGQRVREAGDGS 175
           C + G +N  DC  C   P F GQ    AG  S
Sbjct: 331 CQNGGYINPNDCNNCKCPPGFGGQLCDVAGTNS 363


>D85744-1|BAA12861.1|  605|Caenorhabditis elegans HCH-1 protein.
          Length = 605

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -1

Query: 273 CLHRGAVNKEDCTPCSRFPTFAGQRVREAGDGS 175
           C + G +N  DC  C   P F GQ    AG  S
Sbjct: 331 CQNGGYINPNDCNNCKCPPGFGGQLCDVAGTNS 363


>Z82079-1|CAB04949.1| 1529|Caenorhabditis elegans Hypothetical
           protein F15D4.1 protein.
          Length = 1529

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +2

Query: 383 IRNTNYKRLNYLVSQVVTYIIVHNVVLIPF 472
           I +T+Y RL+Y +   + Y+++H ++L  F
Sbjct: 105 IASTSYDRLSYELIDTILYLLIHVLILDKF 134


>Z80344-7|CAB02491.1| 1529|Caenorhabditis elegans Hypothetical
           protein F15D4.1 protein.
          Length = 1529

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +2

Query: 383 IRNTNYKRLNYLVSQVVTYIIVHNVVLIPF 472
           I +T+Y RL+Y +   + Y+++H ++L  F
Sbjct: 105 IASTSYDRLSYELIDTILYLLIHVLILDKF 134


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,228,169
Number of Sequences: 27780
Number of extensions: 388890
Number of successful extensions: 940
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)