Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0058
         (423 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces...   153   1e-38
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    28   0.52 
SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   3.7  
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha...    25   4.8  
SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S...    25   6.4  
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce...    24   8.5  
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom...    24   8.5  

>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 208

 Score =  153 bits (370), Expect = 1e-38
 Identities = 76/133 (57%), Positives = 93/133 (69%), Gaps = 1/133 (0%)
 Frame = +1

Query: 28  IPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVRYHT 207
           +PN HFHKDWQR+VKTWFNQP R+ RR+Q R               +RP V+ PT+RY+ 
Sbjct: 9   LPNAHFHKDWQRYVKTWFNQPGRKLRRRQAR-QTKAAKIAPRPVEAIRPAVKPPTIRYNM 67

Query: 208 KVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP 387
           KVRAGRGFTL E++AAG++   A TIGI VD RRRN+S ESLQ NV+RIK Y A LI+FP
Sbjct: 68  KVRAGRGFTLEELKAAGVSRRVASTIGIPVDHRRRNRSEESLQRNVERIKVYLAHLIVFP 127

Query: 388 -KGKKVLKGDANE 423
            K  +  KGDA +
Sbjct: 128 RKAGQPKKGDATD 140


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1283

 Score = 28.3 bits (60), Expect = 0.52
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
 Frame = -1

Query: 240  TKSESSTGAYFSM----VPNSWASHYRT*RPSCRTWSYGLSFLY 121
            T   +STG+Y  M    +   W S   T    C TWSY  S+ Y
Sbjct: 1215 TVQGTSTGSYICMPHFQIQYDWCSAGVTDMSECNTWSYQKSYDY 1258


>SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 279

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 221 VEDSLFVKLGPQD*TQYLPERLELL 295
           +ED+LF +L   D T Y  +RLE+L
Sbjct: 95  LEDALFSQLDEFDDTAYREQRLEML 119


>SPCC1322.14c |vtc4||vacuolar transporter chaperone
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 32  LMDISTRIGKDLLKLGLTSQLDDTAES 112
           L+DIS R G+D     L S+L D  +S
Sbjct: 556 LLDISKRKGRDSFVAALNSRLKDIKDS 582


>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
           Sop2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 377

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -2

Query: 257 PAALISRRVNPLPARTLVW 201
           P ALI+ +++ LP R+L+W
Sbjct: 241 PRALITVKLSQLPLRSLLW 259


>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 642

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -3

Query: 355 LFFEH*FAMIQQTCCVYGDLQQFQSF-GQILGS 260
           L F+H  + + QTC  +G  QQ ++   ++ GS
Sbjct: 169 LVFKHDMSRVVQTCVKFGSKQQRETICAELAGS 201


>SPBC6B1.05c |||ubiquitin-like conjugating
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 649

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = -1

Query: 309 STGIYSNSNRSGKYWVQSCGPNFTKSESSTGAYFSMVPNSWASHY 175
           ST  YSN  R   +  + C     K+E +      + PN +++ Y
Sbjct: 368 STVSYSNPVRQSLFTFEDCKRKLPKAECAAQRLKEIYPNMFSTGY 412


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,826,127
Number of Sequences: 5004
Number of extensions: 36164
Number of successful extensions: 103
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)