Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0058
         (423 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0)             173   7e-44
SB_47063| Best HMM Match : APOBEC_C (HMM E-Value=0.41)                 28   2.8  
SB_58892| Best HMM Match : IncA (HMM E-Value=1.3)                      28   3.7  
SB_32771| Best HMM Match : IncA (HMM E-Value=1.4)                      28   3.7  
SB_54753| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.8  
SB_18936| Best HMM Match : Glyco_hydro_67N (HMM E-Value=7)             27   4.8  
SB_6638| Best HMM Match : CaMBD (HMM E-Value=5.1)                      27   4.8  
SB_59285| Best HMM Match : SecIII_SopE_N (HMM E-Value=3.7)             27   6.4  
SB_55508| Best HMM Match : Glyco_hydro_67N (HMM E-Value=5.4)           27   6.4  
SB_52261| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_52170| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)              27   6.4  
SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.4  
SB_902| Best HMM Match : Collagen (HMM E-Value=0.00027)                27   6.4  
SB_38544| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  

>SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0)
          Length = 600

 Score =  173 bits (420), Expect = 7e-44
 Identities = 82/136 (60%), Positives = 101/136 (74%), Gaps = 1/136 (0%)
 Frame = +1

Query: 13  KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 192
           K NN+IPNGHFHKDWQR+VKTWF+QP R+ RR+  R               LRPIVRCPT
Sbjct: 4   KRNNIIPNGHFHKDWQRYVKTWFDQPGRKKRRRVARQIKAAKIAPRPVAGSLRPIVRCPT 63

Query: 193 VRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRAR 372
            +Y+TKVRAGRGFTL E++AAG+    A TIGIAVD RR+N+S ESLQ NVQR+KEY+++
Sbjct: 64  FKYNTKVRAGRGFTLDELKAAGIPRKVAPTIGIAVDHRRKNRSAESLQANVQRLKEYKSK 123

Query: 373 LILFP-KGKKVLKGDA 417
           LI+FP K  K  +GD+
Sbjct: 124 LIVFPRKANKPKQGDS 139


>SB_47063| Best HMM Match : APOBEC_C (HMM E-Value=0.41)
          Length = 430

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -2

Query: 305 RGSTAIPIVRANTGFNPAALISRRVNPLPAR--TLVWYRTVGHR 180
           +GS     V ++T  NP  L++R  N +P R  +L+W++  G +
Sbjct: 375 KGSWVALTVESSTLANPNILLARIQNLMPGRKASLLWFKATGKK 418


>SB_58892| Best HMM Match : IncA (HMM E-Value=1.3)
          Length = 449

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -2

Query: 305 RGSTAIPIVRANTGFNPAALISRRVNPLPAR--TLVWYRTVGHRTIGRNGP 159
           +GS     V  +T  NP  L++R  N +P R  +L+W++    + +  + P
Sbjct: 176 KGSWVALTVEGSTLANPNILLARIQNLMPGRKASLLWFKATAEKGLKSDNP 226


>SB_32771| Best HMM Match : IncA (HMM E-Value=1.4)
          Length = 318

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -2

Query: 305 RGSTAIPIVRANTGFNPAALISRRVNPLPAR--TLVWYRTVGHRTIGRNGP 159
           +GS     V  +T  NP  L++R  N +P R  +L+W++    + +  + P
Sbjct: 66  KGSWVALTVEGSTLANPNILLARIQNLMPGRKASLLWFKATAEKGLKSDNP 116


>SB_54753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 462

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -1

Query: 138 GLSFLYSILLSAVSSSWLVKPSFNKSLPI 52
           G  F  +IL+ A  SS L++P F+ SLP+
Sbjct: 195 GFDFGKAILVKASLSSDLIRPGFDVSLPL 223


>SB_18936| Best HMM Match : Glyco_hydro_67N (HMM E-Value=7)
          Length = 154

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -2

Query: 305 RGSTAIPIVRANTGFNPAALISRRVNPLPAR--TLVWYRTVGHR 180
           +GS A   V  +T  NP  L++R  N +P R  +L+W++    +
Sbjct: 60  KGSWAALTVEGSTLANPNILLARIQNLMPGRKASLLWFKATAEK 103


>SB_6638| Best HMM Match : CaMBD (HMM E-Value=5.1)
          Length = 165

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -2

Query: 305 RGSTAIPIVRANTGFNPAALISRRVNPLPAR--TLVWYRTVGHR 180
           +GS     V ++T  NP  L++R  N +P R   L+W++  G +
Sbjct: 110 KGSWVALTVESSTLANPNILLARIQNLMPGRKALLLWFKATGKK 153


>SB_59285| Best HMM Match : SecIII_SopE_N (HMM E-Value=3.7)
          Length = 204

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -2

Query: 305 RGSTAIPIVRANTGFNPAALISRRVNPLPAR--TLVWYRTVGHR 180
           +GS     V  +T  NP+ L++R  N +P R  +L+W++    +
Sbjct: 110 KGSWVALTVEGSTLANPSILLARIQNLMPGRKASLLWFKATAEK 153


>SB_55508| Best HMM Match : Glyco_hydro_67N (HMM E-Value=5.4)
          Length = 154

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -2

Query: 305 RGSTAIPIVRANTGFNPAALISRRVNPLPAR--TLVWYRTVGHR 180
           +GS     V  +T  NP+ L++R  N +P R  +L+W++    +
Sbjct: 60  KGSWVALTVEGSTLANPSILLARIQNLMPGRKASLLWFKATAEK 103


>SB_52261| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 14/22 (63%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = +1

Query: 199 YHTKVRA--GRGFTLREIRAAG 258
           YHTK  A  GRG TL  IRA G
Sbjct: 519 YHTKKSAHQGRGITLSSIRAGG 540


>SB_52170| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)
          Length = 291

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 159 SCRTWSYGLSFLYSILLSAVSSSWLV 82
           SCRTW    SF+   +L AV S+ L+
Sbjct: 199 SCRTWICSTSFMSPSILVAVGSAVLI 224


>SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1304

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 261  QSCGPNFTKSESSTGAYFSMVPNSWASHYRT*RP 160
            + C P +T++  + GAY   VP S  +H  T  P
Sbjct: 1173 ERCAPGYTRATPNGGAYTPCVPCSCNNHTDTCDP 1206


>SB_902| Best HMM Match : Collagen (HMM E-Value=0.00027)
          Length = 617

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 159 SCRTWSYGLSFLYSILLSAVSSSWLV 82
           SCRTW    SF+   +L AV S+ L+
Sbjct: 137 SCRTWICSTSFMSPSILVAVGSAVLI 162


>SB_38544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 935

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
 Frame = -1

Query: 162 PSCR--TWSYGLSFLYSILLSAVS 97
           P+CR  TWSY ++ L+ IL  AVS
Sbjct: 304 PTCRVSTWSYNMTCLHIILHYAVS 327


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,527,112
Number of Sequences: 59808
Number of extensions: 259203
Number of successful extensions: 820
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 801830705
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)