Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0058
         (423 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.27 
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   2.5  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   7.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   7.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   7.5  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   7.5  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   7.5  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 0.27
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -2

Query: 116 FCFLRYRRAGWLNQVLTNLCQSLWKC 39
           FC+ R   A W N V  NL  SL KC
Sbjct: 538 FCYFRRNAATWKNAVRHNL--SLHKC 561


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 141 SSTSCSWAVTSY 176
           S + C+W +TSY
Sbjct: 66  SGSKCTWTITSY 77


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 117 ILLSAVSSSWLVKPSFNKSLPILVE 43
           I+    + + L   S NKSLPIL E
Sbjct: 12  IVCQGTTGNILRGESLNKSLPILHE 36


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 147 WSYGLSFLYSILLSAVSSSWL 85
           WS  L FL  +L    S+SW+
Sbjct: 292 WSGCLQFLVPMLQGFPSNSWV 312


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 147 WSYGLSFLYSILLSAVSSSWL 85
           WS  L FL  +L    S+SW+
Sbjct: 260 WSGCLQFLVPMLQGFPSNSWV 280


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 117 ILLSAVSSSWLVKPSFNKSLPILVE 43
           I+    + + L   S NKSLPIL E
Sbjct: 12  IVCQGTTGNILRGESLNKSLPILHE 36


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 117 ILLSAVSSSWLVKPSFNKSLPILVE 43
           I+    + + L   S NKSLPIL E
Sbjct: 12  IVCQGTTGNILRGESLNKSLPILHE 36


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,227
Number of Sequences: 438
Number of extensions: 2607
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10873896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)