Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0058
(423 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g49010.2 68416.m05354 60S ribosomal protein L13 (RPL13B) / br... 151 1e-37
At3g49010.1 68416.m05353 60S ribosomal protein L13 (RPL13B) / br... 151 1e-37
At5g23900.1 68418.m02807 60S ribosomal protein L13 (RPL13D) 146 7e-36
At3g48960.1 68416.m05348 60S ribosomal protein L13 (RPL13C) 60S ... 138 1e-33
At3g02660.1 68416.m00257 tRNA synthetase class I (W and Y) famil... 32 0.18
At2g02060.1 68415.m00141 calcium-dependent protein kinase-relate... 29 0.98
At1g62250.2 68414.m07023 expressed protein 29 1.3
At1g62250.1 68414.m07022 expressed protein 29 1.3
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 29 1.7
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 29 1.7
At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pf... 27 5.2
At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pf... 27 5.2
At5g20940.1 68418.m02488 glycosyl hydrolase family 3 protein bet... 27 5.2
At2g37260.1 68415.m04571 WRKY family transcription factor (TTG2)... 27 5.2
At5g12280.1 68418.m01444 hypothetical protein 27 6.9
At5g49340.1 68418.m06105 expressed protein similar to unknown pr... 26 9.1
At4g10770.1 68417.m01757 oligopeptide transporter OPT family pro... 26 9.1
At3g17920.1 68416.m02282 leucine-rich repeat family protein cont... 26 9.1
At2g23070.1 68415.m02750 casein kinase II alpha chain, putative ... 26 9.1
At1g14710.2 68414.m01759 hydroxyproline-rich glycoprotein family... 26 9.1
At1g14710.1 68414.m01758 hydroxyproline-rich glycoprotein family... 26 9.1
>At3g49010.2 68416.m05354 60S ribosomal protein L13 (RPL13B) /
breast basic conserved protein 1-related (BBC1)
Length = 206
Score = 151 bits (367), Expect = 1e-37
Identities = 71/136 (52%), Positives = 94/136 (69%), Gaps = 1/136 (0%)
Frame = +1
Query: 13 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 192
K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+ R LRP+V T
Sbjct: 2 KHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQT 61
Query: 193 VRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRAR 372
++Y+ KVR G+GFTL E++AAG+ A TIGIAVD RR+N+S+E LQ NVQR+K Y+ +
Sbjct: 62 LKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTK 121
Query: 373 LILFP-KGKKVLKGDA 417
L++FP + +KV GD+
Sbjct: 122 LVIFPRRARKVKAGDS 137
>At3g49010.1 68416.m05353 60S ribosomal protein L13 (RPL13B) /
breast basic conserved protein 1-related (BBC1)
Length = 206
Score = 151 bits (367), Expect = 1e-37
Identities = 71/136 (52%), Positives = 94/136 (69%), Gaps = 1/136 (0%)
Frame = +1
Query: 13 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 192
K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+ R LRP+V T
Sbjct: 2 KHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQT 61
Query: 193 VRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRAR 372
++Y+ KVR G+GFTL E++AAG+ A TIGIAVD RR+N+S+E LQ NVQR+K Y+ +
Sbjct: 62 LKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTK 121
Query: 373 LILFP-KGKKVLKGDA 417
L++FP + +KV GD+
Sbjct: 122 LVIFPRRARKVKAGDS 137
>At5g23900.1 68418.m02807 60S ribosomal protein L13 (RPL13D)
Length = 206
Score = 146 bits (353), Expect = 7e-36
Identities = 68/136 (50%), Positives = 94/136 (69%), Gaps = 1/136 (0%)
Frame = +1
Query: 13 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 192
K NN+IP+ HF K WQ +VKTWFNQPAR+ RR+ R LRP+V T
Sbjct: 2 KHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQT 61
Query: 193 VRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRAR 372
++Y+ KVRAG+GFTL E++ AG+ A TIGI+VD RR+N+S+E LQ NVQR+K Y+A+
Sbjct: 62 LKYNMKVRAGKGFTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAK 121
Query: 373 LILFP-KGKKVLKGDA 417
L++FP + ++V GD+
Sbjct: 122 LVVFPRRSRQVKAGDS 137
>At3g48960.1 68416.m05348 60S ribosomal protein L13 (RPL13C) 60S
ribosomal protein L13 (BBC1), Arabidopsis thaliana,
gb:X75162
Length = 206
Score = 138 bits (334), Expect = 1e-33
Identities = 65/136 (47%), Positives = 91/136 (66%), Gaps = 1/136 (0%)
Frame = +1
Query: 13 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 192
K NN+IPNGHF K W+ +VKT FNQPA + RR+ R +RP+V T
Sbjct: 2 KHNNVIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQT 61
Query: 193 VRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRAR 372
+ Y+ KVRAG+GFTL E++AAG+ A TIGI+VD R+N+S+E Q NVQR+K Y+A+
Sbjct: 62 LTYNMKVRAGKGFTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAK 121
Query: 373 LILFPKGKKVLK-GDA 417
L++FP+ + +K GD+
Sbjct: 122 LVIFPRCARTVKVGDS 137
>At3g02660.1 68416.m00257 tRNA synthetase class I (W and Y) family
protein similar to SP|P00952 Tyrosyl-tRNA synthetase (EC
6.1.1.1) (Tyrosine--tRNA ligase) (TyrRS) {Bacillus
stearothermophilus}; contains Pfam profiles PF00579:
tRNA synthetases class I (W and Y), PF01479: S4 domain
Length = 511
Score = 31.9 bits (69), Expect = 0.18
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -2
Query: 281 VRANTGFNPAALISRRVNPLPARTLVWYRTVGHRTIGRNGPAAGR 147
+R GF+P A N L L W++ GH+ +G G A GR
Sbjct: 115 LRVYCGFDPTAESLHLGNLLGIIVLSWFQRCGHQAVGLIGGATGR 159
>At2g02060.1 68415.m00141 calcium-dependent protein kinase-related /
CDPK-related contains TIGRFAM TIGR01557: myb-like
DNA-binding domain, SHAQKYF class; contains Pfam
PF00249: Myb-like DNA-binding domain; similar to CDPK
substrate protein 1; CSP1 (GI:6942190) [Mesembryanthemum
crystallinum].
Length = 626
Score = 29.5 bits (63), Expect = 0.98
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -2
Query: 143 ATALAFFILFCFLRYRRAGWLNQV 72
A L FFI FCF YR +G+L V
Sbjct: 266 AVLLLFFICFCFSLYRTSGYLRIV 289
>At1g62250.2 68414.m07023 expressed protein
Length = 223
Score = 29.1 bits (62), Expect = 1.3
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +1
Query: 196 RYHTKVRAGRGFTLREIRAAGLNPVFARTIGIA-VDPRRRNKSVESLQINVQRIKEY 363
RY T + G G TL+E +AG+N A +G D R+ +++ + ++R++ Y
Sbjct: 98 RYRTVIGRGEGETLKEFISAGVN---AYALGCTDEDLRKELMAMKDSGLEIERMENY 151
>At1g62250.1 68414.m07022 expressed protein
Length = 267
Score = 29.1 bits (62), Expect = 1.3
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +1
Query: 196 RYHTKVRAGRGFTLREIRAAGLNPVFARTIGIA-VDPRRRNKSVESLQINVQRIKEY 363
RY T + G G TL+E +AG+N A +G D R+ +++ + ++R++ Y
Sbjct: 98 RYRTVIGRGEGETLKEFISAGVN---AYALGCTDEDLRKELMAMKDSGLEIERMENY 151
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 28.7 bits (61), Expect = 1.7
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -3
Query: 301 DLQQFQSFGQILGSILRP 248
DL+ QS GQI+G +LRP
Sbjct: 52 DLKSLQSVGQIIGEVLRP 69
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 28.7 bits (61), Expect = 1.7
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -3
Query: 301 DLQQFQSFGQILGSILRP 248
DL+ QS GQI+G +LRP
Sbjct: 52 DLKSLQSVGQIIGEVLRP 69
>At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 698
Score = 27.1 bits (57), Expect = 5.2
Identities = 22/76 (28%), Positives = 33/76 (43%)
Frame = -1
Query: 273 KYWVQSCGPNFTKSESSTGAYFSMVPNSWASHYRT*RPSCRTWSYGLSFLYSILLSAVSS 94
+Y + S + T E + FS V SHY+ R SCR S S L+ +++
Sbjct: 624 EYVLDSPKGSATWPEEKLASSFSPVKAIRRSHYKFLRSSCRRTSES-SHLWGLVIVTGGW 682
Query: 93 SWLVKPSFNKSLPILV 46
+K N LP+ V
Sbjct: 683 DGRIKLFHNYGLPVPV 698
>At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 694
Score = 27.1 bits (57), Expect = 5.2
Identities = 22/76 (28%), Positives = 33/76 (43%)
Frame = -1
Query: 273 KYWVQSCGPNFTKSESSTGAYFSMVPNSWASHYRT*RPSCRTWSYGLSFLYSILLSAVSS 94
+Y + S + T E + FS V SHY+ R SCR S S L+ +++
Sbjct: 620 EYVLDSPKGSATWPEEKLASSFSPVKAIRRSHYKFLRSSCRRTSES-SHLWGLVIVTGGW 678
Query: 93 SWLVKPSFNKSLPILV 46
+K N LP+ V
Sbjct: 679 DGRIKLFHNYGLPVPV 694
>At5g20940.1 68418.m02488 glycosyl hydrolase family 3 protein
beta-glucosidase, common nasturtium, PIR:T10521
Length = 626
Score = 27.1 bits (57), Expect = 5.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 232 TLREIRAAGLNPVFARTIGIAVDPR 306
T E+RA G+ VFA I + DPR
Sbjct: 158 TALEVRATGIQYVFAPCIAVCRDPR 182
>At2g37260.1 68415.m04571 WRKY family transcription factor (TTG2)
contains Pfam profile: PF03106 WRKY DNA -binding domain
Length = 349
Score = 27.1 bits (57), Expect = 5.2
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -1
Query: 300 IYSNSNRSGKYWVQSCGPNFTKSESSTGAYFSMVPNSWASH 178
+ ++R+G VQ P+FT+SE+STG S+ +W +
Sbjct: 54 VSQGTHRAGPNLVQKV-PSFTESETSTGDRSSVDGYNWRKY 93
>At5g12280.1 68418.m01444 hypothetical protein
Length = 419
Score = 26.6 bits (56), Expect = 6.9
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 319 SVESLQINVQRIKEYRARLILFPKGKKVLKGDA 417
+V+SL NV +KE + I FP K+ L+G A
Sbjct: 362 TVQSLSENVASLKEKISGEIQFPTNKQKLRGKA 394
>At5g49340.1 68418.m06105 expressed protein similar to unknown
protein (emb|CAB82953.1)
Length = 457
Score = 26.2 bits (55), Expect = 9.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 209 LVWYRTVGHRTIGRNGPAAGRGATALA 129
+ WYRT GH ++ R PA RG + A
Sbjct: 390 MTWYRTDGHPSVYRQ-PADPRGTSPAA 415
>At4g10770.1 68417.m01757 oligopeptide transporter OPT family
protein similar to oligopeptide transporter Opt1p
[Candida albicans] GI:2367386; contains Pfam profile
PF03169: OPT oligopeptide transporter protein
Length = 766
Score = 26.2 bits (55), Expect = 9.1
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Frame = -2
Query: 122 ILFCFLRYRRAGWLNQVLTNLC----QSLWKC 39
++ CF+ A WL + + N+C S+W C
Sbjct: 569 LISCFVYLTTAWWLMETIPNICDSVTNSVWTC 600
>At3g17920.1 68416.m02282 leucine-rich repeat family protein
contains leucine rich repeat (LRR) domains, Pfam:PF00560
Length = 962
Score = 26.2 bits (55), Expect = 9.1
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -2
Query: 341 LICNDSTDLLRLRGSTAIPIVRANTGFNPAALISRRVNPL 222
LIC++STD LR ++ I ++ + +N A IS N L
Sbjct: 141 LICHNSTDALRHVFASRIAEIKDSPQWNKLAFISCACNRL 180
>At2g23070.1 68415.m02750 casein kinase II alpha chain, putative
similar to casein kinase II, alpha chain (CK II) [Zea
mays] SWISS-PROT:P28523; contains protein kinase domain,
Pfam:PF00069
Length = 432
Score = 26.2 bits (55), Expect = 9.1
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +1
Query: 211 VRAGRGFTLREIR--AAGLNPVFARTIGIAVDPRRRNKSVESLQINVQR 351
+R GFT+ +R +A N +F+ + P +RN + SLQ N++R
Sbjct: 3 LRPCTGFTISSLRNASAANNNLFSLLSFSSSSPAKRNLLLSSLQDNLRR 51
>At1g14710.2 68414.m01759 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 601
Score = 26.2 bits (55), Expect = 9.1
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -1
Query: 291 NSNRSGKYWVQSCGPNFTKSESSTGAY 211
NS++ GK+ + GP F K G Y
Sbjct: 114 NSDQVGKFGARRSGPGFNKHHGGGGGY 140
>At1g14710.1 68414.m01758 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 601
Score = 26.2 bits (55), Expect = 9.1
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -1
Query: 291 NSNRSGKYWVQSCGPNFTKSESSTGAY 211
NS++ GK+ + GP F K G Y
Sbjct: 114 NSDQVGKFGARRSGPGFNKHHGGGGGY 140
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,495,292
Number of Sequences: 28952
Number of extensions: 187600
Number of successful extensions: 509
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 655255392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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