Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0056
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    31   0.12 
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    27   1.9  
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos...    27   3.4  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   5.9  
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa...    25   7.8  

>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 197 CRSRST*RCPYLNPTR-STSQWSNLSMYLFIRLSTKLLKN 313
           C   ST  CPYL PT        NL ++L++RLS   + N
Sbjct: 404 CNPASTILCPYLFPTNVRMESLINLELFLYLRLSQNDIDN 443


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 181 PHPVAVSVPQYVKVPIPQPYPVHVTVEQP 267
           P PVAV   Q  +  I Q  P+HV+  +P
Sbjct: 278 PQPVAVEAIQQSRAVISQQLPLHVSPRKP 306


>SPBC8D2.01 |gsk31||serine/threonine protein kinase
           Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 381

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +1

Query: 148 VTVVKKIGVPIPHPVAVSVPQYVKVPIPQPYP 243
           V +++ +G P  H ++V  P YV   +P   P
Sbjct: 236 VEIIRVLGTPSYHEISVMNPNYVNHSLPNVRP 267


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +1

Query: 175 PIPHPVAVSVPQYVKVPIPQPYPVHV 252
           P P P AV VP     PIP P P  +
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPI 757


>SPCC4B3.12 |set9||histone lysine methyltransferase
           Set9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 441

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -1

Query: 330 DRVRYWFFNNLVDNLINRYMDRLLHCDVDRVGLRY 226
           D+V YW   + V  L++R ++R+  C +  +  +Y
Sbjct: 24  DKVFYWSQIHKVRKLVDRSIERMESCSIINIITKY 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,738,515
Number of Sequences: 5004
Number of extensions: 59436
Number of successful extensions: 179
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)