Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0056
(696 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1067 - 27326167-27326295,27326572-27326656,27326993-273270... 30 2.0
04_04_0239 - 23843235-23843243,23843334-23844047,23844138-238442... 29 2.7
11_06_0679 - 26227654-26227770,26234067-26236217 29 3.5
03_01_0336 - 2659349-2659486,2659607-2659758,2660257-2660365,266... 29 3.5
02_03_0005 + 13865016-13865025,13865247-13865374,13865467-138659... 29 3.5
07_03_0698 - 20765305-20768526 28 6.2
06_03_1303 + 29180837-29181205,29181289-29181306,29181337-291816... 28 6.2
12_01_1091 + 11349034-11349438,11350581-11350748,11351189-113515... 28 8.1
07_01_0359 - 2633735-2634115,2634345-2634600,2634708-2635552,263... 28 8.1
03_06_0702 + 35626836-35627712,35627820-35627992,35629318-35629584 28 8.1
01_06_1623 - 38716606-38717424 28 8.1
>06_03_1067 - 27326167-27326295,27326572-27326656,27326993-27327033,
27327274-27327333,27327843-27327962,27328842-27329114,
27329186-27329257,27329798-27329860,27329957-27330139,
27330544-27330660,27330734-27332683,27332770-27332907,
27333003-27333284,27334650-27335522
Length = 1461
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +1
Query: 85 RPSEEWEPEGHTHTEHTKPYHVTVVKKIGVPIPHPVAVSVPQYVKVPIPQP 237
RPS GH H P + + + P P PV +SVP+ + P P P
Sbjct: 947 RPSRSEFKGGHDHRSPCVPSNRRDIPLVRRP-PSPVVLSVPRVPRPPPPSP 996
>04_04_0239 -
23843235-23843243,23843334-23844047,23844138-23844287,
23844389-23844601,23844697-23844811,23844919-23846300,
23847217-23847279
Length = 881
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +1
Query: 160 KKIGVPIPHPVAVSVPQYVKVPI--PQPYPVHVTVEQPI 270
K P P P AV +P+ V +P P P PV T P+
Sbjct: 746 KPAATPGPAPQAVPLPKPVSIPASGPAPAPVSATTAAPV 784
>11_06_0679 - 26227654-26227770,26234067-26236217
Length = 755
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/60 (26%), Positives = 20/60 (33%)
Frame = -3
Query: 247 GPGRVEVWAPSRTAGPTQPPDGESELRSSSPRSHGTASCVLCACGLRAPILQKAERWRAL 68
G GR W R G PD ++ P H T C C + P E R +
Sbjct: 589 GRGRGRWWNNERGKGRENKPDQTKFCQTHGPGGHSTEECYSKFCHIHGPGGHSTEECRQM 648
>03_01_0336 -
2659349-2659486,2659607-2659758,2660257-2660365,
2660459-2660563,2660874-2660957,2661072-2662745
Length = 753
Score = 29.1 bits (62), Expect = 3.5
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = -3
Query: 316 LVFQQLGGQPYKQVHG*VAPL*RGPGRVEVWAPSRTAGPTQ--PPDGE 179
L F QLG Q + VHG P+ G G W P+R +GPT+ P GE
Sbjct: 408 LSFHQLGTQSREMVHG-KPPV--GGG----WTPNRNSGPTRKAPSRGE 448
>02_03_0005 +
13865016-13865025,13865247-13865374,13865467-13865994,
13866111-13866287
Length = 280
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +1
Query: 166 IGVPIPHPVAVSVPQYVKVPIPQ-PYPVH 249
IG P+P+P +V VP V VPIP P+H
Sbjct: 91 IGPPLPYPFSVPVP--VPVPIPSGAVPMH 117
>07_03_0698 - 20765305-20768526
Length = 1073
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 408 LRDGHLYFFFDLNGIRLFDFIGHWFFD-RVRYWFFNNLVDNLI 283
L G L L+GIR H F + +R+W F NL+D +I
Sbjct: 950 LNQGALDVLSRLDGIRYLRLCYHSFAEGALRFWSFGNLMDLII 992
>06_03_1303 +
29180837-29181205,29181289-29181306,29181337-29181622,
29185008-29186284,29186499-29187005
Length = 818
Score = 28.3 bits (60), Expect = 6.2
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Frame = +2
Query: 230 LNPTRSTSQWSNLSMYLFIRLSTKL-------LKNQYRTRSKNQCPMKSKSLIPLRSKKK 388
L+ RS S WS ++ +S KL L+ + R S+ M+ + R +K+
Sbjct: 469 LDQVRSGSFWSKYKHTKYVPVSEKLKDFIYAQLEEKVRRLSEYDKRMERERE---RERKR 525
Query: 389 *RCPSLSPIPSMYPCTNTSTT 451
R PS SP PS P + S T
Sbjct: 526 VRAPSPSPSPSPSPSPSASAT 546
>12_01_1091 +
11349034-11349438,11350581-11350748,11351189-11351500,
11351995-11352063,11352177-11352269,11352642-11352844,
11354783-11355056,11355561-11355606,11355646-11355806
Length = 576
Score = 27.9 bits (59), Expect = 8.1
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = +3
Query: 45 NNSRPSLSSARQRSAF*RMGARRPHAHRTHEAVPCD-RGEEDRSSDSPSGGCVGPAVREG 221
+N RP+++ Q S + AR H A P + GEE +PS V A+R
Sbjct: 22 HNPRPAVAIEAQHSFPHGLLARAACQPLRHVAAPAEGEGEEVEDLGTPSAAAVAEAIRRA 81
Query: 222 AHTS 233
+ S
Sbjct: 82 SSAS 85
>07_01_0359 -
2633735-2634115,2634345-2634600,2634708-2635552,
2635681-2635956,2636778-2636941,2637924-2638197
Length = 731
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -2
Query: 164 FFTTVTWYGFVCSVCVWPSGSHSSEGRALASAT 66
F +V W FV +W S H S RA A +T
Sbjct: 155 FLLSVYWVSFVTYFVLWKSYKHVSNMRAAARST 187
>03_06_0702 + 35626836-35627712,35627820-35627992,35629318-35629584
Length = 438
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 127 EHTKPYH-VTVVKKIGVPIPHPVAVSVPQYVKVPIPQP 237
E T P+ V V + P+PVAV+V + P+PQP
Sbjct: 72 ESTTPHSPVAVDEPESSTAPNPVAVAVAEPKPAPVPQP 109
>01_06_1623 - 38716606-38717424
Length = 272
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +1
Query: 136 KPYHVTVVKKIGVPIPHPVAVSVPQYVKVPIP 231
+PY V V++ IG PIP A +VP + +P+P
Sbjct: 11 RPYFVDVLQSIGHPIP---ATAVPD-ITLPVP 38
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,988,945
Number of Sequences: 37544
Number of extensions: 418760
Number of successful extensions: 1615
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1594
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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