Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0054
(694 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0) 308 4e-84
SB_8490| Best HMM Match : HSP70 (HMM E-Value=0) 259 2e-69
SB_45540| Best HMM Match : HSP70 (HMM E-Value=0) 246 1e-65
SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.) 204 4e-53
SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36) 131 6e-31
SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.) 99 4e-21
SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049) 88 7e-18
SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 6e-08
SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07) 36 0.031
SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16) 36 0.031
SB_8282| Best HMM Match : NHL (HMM E-Value=9.2e-23) 32 0.51
SB_16422| Best HMM Match : HMG_box (HMM E-Value=8.7e-26) 30 2.0
SB_41346| Best HMM Match : Ion_trans (HMM E-Value=0) 29 2.7
SB_27502| Best HMM Match : Seryl_tRNA_N (HMM E-Value=1.6) 29 2.7
SB_23556| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_20801| Best HMM Match : Sas10_Utp3 (HMM E-Value=0.46) 29 3.6
SB_42147| Best HMM Match : Thioredoxin (HMM E-Value=0.3) 29 4.7
>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1327
Score = 308 bits (755), Expect = 4e-84
Identities = 145/169 (85%), Positives = 155/169 (91%)
Frame = +1
Query: 187 IGTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTT 366
+GTVIGIDLGTTYSCVGV+KNGRVEIIANDQGNRITPSYVAFT++GERLIGD AKNQLTT
Sbjct: 700 VGTVIGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTEEGERLIGDGAKNQLTT 759
Query: 367 NPENTVFDAKRLIGREWSDQTVQHDVKFFPFKVVEKNSKPHVQVQTSQGDKVFAPEEISA 546
NPENTVFDAKRLIGR W D +VQ+D+KFFPFKVV+KN KPHVQV+ K FA EEISA
Sbjct: 760 NPENTVFDAKRLIGRSWDDTSVQNDLKFFPFKVVDKNKKPHVQVKVKDEIKTFAAEEISA 819
Query: 547 MVLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGTISGLNVM 693
MVLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAG I+GL VM
Sbjct: 820 MVLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGAIAGLTVM 868
>SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 640
Score = 259 bits (634), Expect = 2e-69
Identities = 122/165 (73%), Positives = 142/165 (86%)
Frame = +1
Query: 199 IGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTTNPEN 378
IGIDLGTTYSCVGV++NG+VEIIANDQGNR TPSYV FT D ERL+GDAAKNQ+ NPEN
Sbjct: 7 IGIDLGTTYSCVGVFQNGKVEIIANDQGNRTTPSYVGFT-DTERLVGDAAKNQVALNPEN 65
Query: 379 TVFDAKRLIGREWSDQTVQHDVKFFPFKVVEKNSKPHVQVQTSQGDKVFAPEEISAMVLT 558
T+FDAKRLIGR + D TVQ D+K +PFK++ N+KP +QV+ K FA EEIS+MVL
Sbjct: 66 TIFDAKRLIGRRYDDATVQSDMKLWPFKIISDNNKPKIQVEYKGERKTFAAEEISSMVLG 125
Query: 559 KMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGTISGLNVM 693
KMKETAEAYLG+KVT AV+TVPAYFND+QRQATKDAGTI+GLNV+
Sbjct: 126 KMKETAEAYLGQKVTSAVITVPAYFNDSQRQATKDAGTIAGLNVL 170
>SB_45540| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1097
Score = 246 bits (602), Expect = 1e-65
Identities = 118/165 (71%), Positives = 139/165 (84%)
Frame = +1
Query: 199 IGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTTNPEN 378
+GIDLGTTYSCVGV+++G+VEIIANDQGNR TPSYVAF+ D ERLIGDAAKNQ+ NPEN
Sbjct: 7 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFS-DTERLIGDAAKNQVAMNPEN 65
Query: 379 TVFDAKRLIGREWSDQTVQHDVKFFPFKVVEKNSKPHVQVQTSQGDKVFAPEEISAMVLT 558
TVFDAKRLIGR++ D V D+ +PF V+ + +P +QV+ K F PEEIS+MVLT
Sbjct: 66 TVFDAKRLIGRKFDDPVVARDMTHWPFHVIREGERPKIQVEFKGEKKSFFPEEISSMVLT 125
Query: 559 KMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGTISGLNVM 693
KMKETAEAYLG KVT AVVTVPAYF+D+QRQATKDAGTI+GLNV+
Sbjct: 126 KMKETAEAYLGAKVTDAVVTVPAYFHDSQRQATKDAGTIAGLNVL 170
>SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 746
Score = 204 bits (499), Expect = 4e-53
Identities = 112/182 (61%), Positives = 132/182 (72%), Gaps = 25/182 (13%)
Frame = +1
Query: 199 IGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTTNPEN 378
IGIDLGTTYSCVGV+++G+VEIIANDQGNR TPSYVAFT D ERL+GDAAKNQ+ NP N
Sbjct: 7 IGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DEERLVGDAAKNQVAMNPTN 65
Query: 379 TVFDAKRLIGREWSDQTVQHDVKFFPFKVVEKNSKPHVQVQTS----------------- 507
T+FDAKRLIGR + D V+ D+K + F+VV + +P V+V+
Sbjct: 66 TIFDAKRLIGRRFDDPGVKDDMKHWSFEVVNEAGRPKVKVEYKGETKTFFAEEVVNEAGR 125
Query: 508 -------QGD-KVFAPEEISAMVLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKD 663
+G+ K F EEIS+MVL KMKETAEAYLG KVT AVVTVPAYFND+QRQATKD
Sbjct: 126 PKVKVEYKGETKTFFAEEISSMVLNKMKETAEAYLGCKVTDAVVTVPAYFNDSQRQATKD 185
Query: 664 AG 669
AG
Sbjct: 186 AG 187
Score = 93.5 bits (222), Expect = 1e-19
Identities = 45/53 (84%), Positives = 49/53 (92%)
Frame = +1
Query: 535 EISAMVLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGTISGLNVM 693
+IS+MVL KMKETAEAYLG KVT AVVTVPAYFND+QRQATKDAG ISGLNV+
Sbjct: 211 QISSMVLNKMKETAEAYLGCKVTDAVVTVPAYFNDSQRQATKDAGVISGLNVL 263
>SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36)
Length = 437
Score = 131 bits (316), Expect = 6e-31
Identities = 69/169 (40%), Positives = 104/169 (61%), Gaps = 3/169 (1%)
Frame = +1
Query: 196 VIGIDLGTTYSCVGVYK--NGRVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTTN 369
+IGIDLGTTYSCVG Y+ +GR++I +++ +++ PS VAFT G L+G+ A +Q N
Sbjct: 33 IIGIDLGTTYSCVGAYQAISGRIDIFSDENDDKVVPSLVAFTDKGV-LVGEKALSQAEIN 91
Query: 370 PENTVFDAKRLIGREWSDQTVQHDVKFFPFKVV-EKNSKPHVQVQTSQGDKVFAPEEISA 546
P+NT++DAKR IG+ ++ Q + K + F+V +K V V PEEI
Sbjct: 92 PKNTIYDAKRFIGKTFTKQELLEIGKLYQFRVTTDKRGNAGFLVGKKGNFTVITPEEIGG 151
Query: 547 MVLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGTISGLNVM 693
V+ K++ AE L VT AV++VPA F+ QR AT A +++G+ V+
Sbjct: 152 YVIKKLRTMAERNLTTTVTKAVMSVPAEFDIKQRNATVKAASLAGITVL 200
>SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 98.7 bits (235), Expect = 4e-21
Identities = 48/113 (42%), Positives = 72/113 (63%), Gaps = 1/113 (0%)
Frame = +1
Query: 358 LTTNPENTVFDAKRLIGREWSDQTVQHDVKFFPFKVVE-KNSKPHVQVQTSQGDKVFAPE 534
+ +N +NT+ KR IGR++SD VQ ++ P+KVVE N +QVQ +VF+PE
Sbjct: 115 MISNLKNTISQFKRFIGRKFSDPAVQKEIPHLPYKVVELPNDSIGIQVQYLGKQEVFSPE 174
Query: 535 EISAMVLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGTISGLNVM 693
++ AM+ T++K TAE L KVT V++VP+Y+ D QR+ DA +GLN +
Sbjct: 175 QVMAMLFTRLKTTAEIALKTKVTDCVISVPSYYTDRQRRCMLDASATAGLNCL 227
Score = 47.6 bits (108), Expect = 1e-05
Identities = 22/55 (40%), Positives = 35/55 (63%)
Frame = +1
Query: 193 TVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQ 357
+V+G D+G + V + G +E +AN+ +R TPS+V+ D +RLIG + KNQ
Sbjct: 2 SVVGFDVGNQSCYIAVARGGGIETVANEFSDRCTPSFVSL-GDKQRLIGTSGKNQ 55
>SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049)
Length = 179
Score = 87.8 bits (208), Expect = 7e-18
Identities = 41/68 (60%), Positives = 55/68 (80%)
Frame = +1
Query: 490 VQVQTSQGDKVFAPEEISAMVLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAG 669
+ V+ + FAPE+ISA+VL ++K AEA+LG+ V AV+TVPA+FNDAQRQATKDAG
Sbjct: 2 IAVEVCGEKRSFAPEQISAVVLEQLKADAEAFLGQAVKRAVITVPAHFNDAQRQATKDAG 61
Query: 670 TISGLNVM 693
TI+GL+V+
Sbjct: 62 TIAGLDVL 69
>SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1019
Score = 54.8 bits (126), Expect = 6e-08
Identities = 27/75 (36%), Positives = 40/75 (53%)
Frame = +1
Query: 469 EKNSKPHVQVQTSQGDKVFAPEEISAMVLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQR 648
+K PHV+ Q D F PEE+ M+L + E + + V+TVP +FN A+R
Sbjct: 63 KKLDNPHVK-NYQQSDVTFTPEELMGMILNHSRFIGEQFADHPIKDVVLTVPPFFNQAER 121
Query: 649 QATKDAGTISGLNVM 693
+A A + GLNV+
Sbjct: 122 RALLRAAELVGLNVL 136
>SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07)
Length = 592
Score = 35.9 bits (79), Expect = 0.031
Identities = 17/30 (56%), Positives = 23/30 (76%)
Frame = +1
Query: 247 NGRVEIIANDQGNRITPSYVAFTQDGERLI 336
+G IIAND G+R+TP+ VAF+ D E+LI
Sbjct: 82 DGNTTIIANDAGDRVTPAMVAFS-DTEKLI 110
>SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16)
Length = 212
Score = 35.9 bits (79), Expect = 0.031
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = +1
Query: 259 EIIANDQGNRITPSYVAFTQDGERL 333
++I N +G+R TPS VAFT +GERL
Sbjct: 7 KVIENAEGSRTTPSVVAFTPEGERL 31
>SB_8282| Best HMM Match : NHL (HMM E-Value=9.2e-23)
Length = 877
Score = 31.9 bits (69), Expect = 0.51
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +1
Query: 232 VGVYKNGRVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTTNPENTVFDA 393
V Y N +V + A D G+++T Y A T +G+ L+ A + +T N + V A
Sbjct: 728 VSDYHNRKVHVFARDDGSQVT-CYTAVTDEGDGLLN--APSGITVNSKGEVIVA 778
>SB_16422| Best HMM Match : HMG_box (HMM E-Value=8.7e-26)
Length = 245
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Frame = +1
Query: 367 NPENTVFDAKRLIGREWSDQTVQHDVKFF----PFKVVEKNSKPHVQVQTSQGDK 519
NP+ FD R +G EW T + +F K K PH + Q + DK
Sbjct: 41 NPQMHNFDISRKLGLEWQKLTEEEKAYYFEEAKKLKEEHKERYPHYKYQPRKRDK 95
>SB_41346| Best HMM Match : Ion_trans (HMM E-Value=0)
Length = 1264
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -3
Query: 434 CTVWSLHSRPIRRLASKTVFSGLVVSWFLAASPI 333
C VW + +RRL VF G+++ + +AAS I
Sbjct: 387 CAVWKVMRYKVRRLVEHKVFEGIIL-FLIAASSI 419
>SB_27502| Best HMM Match : Seryl_tRNA_N (HMM E-Value=1.6)
Length = 163
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = +1
Query: 391 AKRLIGREWSDQTVQHDVKFFPFKVVEKNSKPHVQVQTSQGDKVFAPEEISAMVLTKMKE 570
A+RL +E ++++V + ++ K KP +K+ PE S++V TK+ E
Sbjct: 60 AERLNMKEKTEKSVNAQLTELVNNLIFKAEKPDEAEMKESMEKIIRPENCSSLVATKLDE 119
>SB_23556| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 671
Score = 29.1 bits (62), Expect = 3.6
Identities = 24/78 (30%), Positives = 37/78 (47%)
Frame = +1
Query: 373 ENTVFDAKRLIGREWSDQTVQHDVKFFPFKVVEKNSKPHVQVQTSQGDKVFAPEEISAMV 552
++T F A R I + + Q V HD+K P + N ++T + K+ +S+
Sbjct: 196 DSTGFAAMRCIAQAYVMQGVSHDMKTKPEITRKLNLVTLCCLETERPTKL-----VSSPS 250
Query: 553 LTKMKETAEAYLGKKVTH 606
L KM+ TA L K TH
Sbjct: 251 LKKMEFTARLTLNWKFTH 268
>SB_20801| Best HMM Match : Sas10_Utp3 (HMM E-Value=0.46)
Length = 521
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = +1
Query: 391 AKRLIGREWSDQTVQHDVKFFPFKVVEKNSKPHVQVQTSQGDKVFAPEEISAMVLTKMKE 570
A+RL +E ++++V + ++ K KP +K+ PE S++V TK+ E
Sbjct: 276 AERLNMKEKTEKSVDAQLADLVNNLIFKAEKPDEAEMKESMEKIIRPENCSSLVATKVDE 335
>SB_42147| Best HMM Match : Thioredoxin (HMM E-Value=0.3)
Length = 787
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -3
Query: 416 HSRPIRRLASKTVFSGLVVSWF 351
H I RL+S+ VFSG V+ WF
Sbjct: 114 HKILIDRLSSRFVFSGTVIQWF 135
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,952,400
Number of Sequences: 59808
Number of extensions: 401280
Number of successful extensions: 920
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -