Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0053
         (636 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5AEJ2 Cluster: Putative uncharacterized protein; n=1; ...    35   1.4  
UniRef50_Q33575 Cluster: NADH-ubiquinone oxidoreductase chain 4;...    33   4.4  
UniRef50_Q2SRZ2 Cluster: Membrane protein, putative; n=4; cellul...    33   5.8  

>UniRef50_Q5AEJ2 Cluster: Putative uncharacterized protein; n=1;
           Candida albicans|Rep: Putative uncharacterized protein -
           Candida albicans (Yeast)
          Length = 470

 Score = 35.1 bits (77), Expect = 1.4
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = +1

Query: 481 QIEHNLLCQVWWLLLTSNSIFVNLFNK*HQRNPKKMSLHKNNVQVV 618
           QI HNLL    + L+  NS FV  F +  QRNP   + H   V+++
Sbjct: 39  QISHNLLSNALYSLIKKNSWFVQNFFQIDQRNPATANGHNFEVRIL 84


>UniRef50_Q33575 Cluster: NADH-ubiquinone oxidoreductase chain 4;
           n=3; Trypanosomatidae|Rep: NADH-ubiquinone
           oxidoreductase chain 4 - Trypanosoma brucei
          Length = 437

 Score = 33.5 bits (73), Expect = 4.4
 Identities = 22/87 (25%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
 Frame = -2

Query: 332 NLLFINYLCWCKSMLFKLVYYAFPVG-EIHKIVLR-SIEKVSVRFLFLTYLAL*KRPVLR 159
           NL+ IN++    ++++  + Y+F +G EI+ + +   +  +S+ F+F   +      ++ 
Sbjct: 5   NLICINFILLIVTIIYIYINYSFCIGIEINYVYVNIYLNYISLWFVFFMGI------IMY 58

Query: 158 ILILKSSSLGGFFKLYYYIFKAYVYLY 78
           ILI   S     +  Y+YI   Y+Y+Y
Sbjct: 59  ILIFLLSKKCVSYNKYFYIVMIYMYIY 85


>UniRef50_Q2SRZ2 Cluster: Membrane protein, putative; n=4; cellular
           organisms|Rep: Membrane protein, putative - Mycoplasma
           capricolum subsp. capricolum (strain California kid /
           ATCC27343 / NCTC 10154)
          Length = 1404

 Score = 33.1 bits (72), Expect = 5.8
 Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
 Frame = +1

Query: 430 YANKVNKKIKRSQPLYSQIEHNLLCQVWWLL----LTSNSIFVNLFNK*HQRNPKKMS 591
           + NK++KK  R+  + S I++NL+ Q +       LTSN +  +L NK +QR   K++
Sbjct: 825 FENKISKKANRNSLIKSSIKNNLIKQEYLKARIDELTSNQVLESLENKNNQRKIFKVN 882


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 507,130,379
Number of Sequences: 1657284
Number of extensions: 9461572
Number of successful extensions: 18963
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18871
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 47296372782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)