Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0053
         (636 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    26   5.2  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    25   6.9  
SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc...    25   6.9  

>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1258

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -2

Query: 389  GLQQCQGQSQAASYR*YYSNLLFINYLCWCKSMLFKLVYYAF 264
            GLQ  +    + S   Y   LL ++   WC   L KL+ Y+F
Sbjct: 931  GLQAVRSSDFSISQFCYLKKLLLVHG-SWCYQRLSKLILYSF 971


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +1

Query: 127 PPRLEDFRMRILSTGLFYSAKYVRNKNLTDTFSIDLKTIL 246
           PP+   F    L   ++Y  K    KN + + S+D+K  L
Sbjct: 294 PPQFSTFNDNALRLRIYYKPKSWLPKNSSCSLSVDVKATL 333


>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 317 NYLCWCKSMLFKLVYYAFPVGEIH 246
           +YLCW  S   K V Y   + ++H
Sbjct: 108 DYLCWAASHFSKFVEYNANINKLH 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,175,658
Number of Sequences: 5004
Number of extensions: 42363
Number of successful extensions: 90
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)