Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0050
(636 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 254 1e-68
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 156 2e-39
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 143 2e-35
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 141 7e-35
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 138 5e-34
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 130 1e-31
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 107 2e-24
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 105 5e-24
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 51 1e-07
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc... 28 0.98
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 1.3
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 27 3.0
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 26 4.0
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 26 5.2
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.2
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 5.2
SPBC582.07c |rpn7||19S proteasome regulatory subunit Rpn7|Schizo... 25 6.9
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 6.9
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po... 25 6.9
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy... 25 6.9
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 25 9.1
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 254 bits (621), Expect = 1e-68
Identities = 125/200 (62%), Positives = 156/200 (78%)
Frame = +1
Query: 37 QPQILLLREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDG 216
Q +++L+EGTD +QG+ QL+SNINAC V D +RTTLGP G DKL+VD G+ VISNDG
Sbjct: 7 QIPVIVLKEGTDDSQGRGQLLSNINACVAVQDTIRTTLGPLGADKLMVDDRGEVVISNDG 66
Query: 217 ATIMKLLDIIHPAAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLI 396
ATIMKLLDI+HPAAKTLVDIA++QDAEVGDGTTSVV+ AGE+L+ + FVE+GV ++I
Sbjct: 67 ATIMKLLDIVHPAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFVEDGVSSHLII 126
Query: 397 RAVRTASRLAIEKIKEQAVKIDNKSPEEQRDLLLKCASTAMSSKLIHQQKDHFSKIVVDA 576
R R A++LA+ KIKE A+ +D + RDLL KCASTAM+SKLI F+K+VVDA
Sbjct: 127 RGYRKAAQLAVNKIKEIAIHLDLSDEGKLRDLLTKCASTAMNSKLIRSNSTFFTKMVVDA 186
Query: 577 VLSLDTPLLPLDMIGIKKVP 636
VL+LD L +MIGIKKVP
Sbjct: 187 VLTLDQEDLNENMIGIKKVP 206
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 156 bits (379), Expect = 2e-39
Identities = 79/177 (44%), Positives = 121/177 (68%), Gaps = 2/177 (1%)
Frame = +1
Query: 73 QTQGKPQLV--SNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDII 246
Q + KPQ V SNI A + V DA+RT+LGP+GMDK+I G+ +++NDGATI+K L ++
Sbjct: 12 QDREKPQEVRLSNIMAARSVADAIRTSLGPKGMDKMIQTGKGEVILTNDGATILKHLSVL 71
Query: 247 HPAAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLA 426
HPAAK LVD++ +QD E GDGTTSVVILAG +L + +++G+HP V+ + + A+
Sbjct: 72 HPAAKMLVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPTVIAESFQRAAGFT 131
Query: 427 IEKIKEQAVKIDNKSPEEQRDLLLKCASTAMSSKLIHQQKDHFSKIVVDAVLSLDTP 597
++ +KE A+ I+ R+ LL+ A+T+++SK++ Q + + I VDAVL + P
Sbjct: 132 VDCMKENALAIE----LSDRESLLRAATTSLNSKIVSQYSNLLAPIAVDAVLKVIDP 184
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 143 bits (346), Expect = 2e-35
Identities = 73/176 (41%), Positives = 111/176 (63%), Gaps = 1/176 (0%)
Frame = +1
Query: 70 DQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIH 249
++ G+ N+ A + + V+++LGP G+DK++VD G ++NDGATI+ LLD+ H
Sbjct: 15 EKISGEDVRNQNVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVTNDGATILSLLDVEH 74
Query: 250 PAAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAI 429
PA K LV++A+ QD EVGDGTTSVVI+A E+L+R V+ +HP +I R A R A+
Sbjct: 75 PAGKVLVELAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGYRLAIREAV 134
Query: 430 EKIKE-QAVKIDNKSPEEQRDLLLKCASTAMSSKLIHQQKDHFSKIVVDAVLSLDT 594
+ + + + +D+ E L+ A T+MSSK+I D FS + VDA+LS+ T
Sbjct: 135 KFMTDVLSCSVDSLGKES----LINVAKTSMSSKIIGNDSDFFSTMAVDAMLSVKT 186
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 141 bits (342), Expect = 7e-35
Identities = 82/196 (41%), Positives = 124/196 (63%), Gaps = 2/196 (1%)
Frame = +1
Query: 52 LLREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHN-GKAVISNDGATIM 228
+ E Q +G+ +S+ V D V++TLGP+GMDK++ ++ G V++NDGATI+
Sbjct: 8 IFNESGIQERGENARLSSFVGAIAVGDLVKSTLGPKGMDKILQSNSSGDIVVTNDGATIL 67
Query: 229 KLLDIIHPAAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVR 408
K + + + AAK LV+I+K QD EVGDGTTSV + A E+L++ + V +HP+V+I R
Sbjct: 68 KSIALDNAAAKVLVNISKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIHPQVIIDGYR 127
Query: 409 TASRLAIEKIKEQAVKIDNKS-PEEQRDLLLKCASTAMSSKLIHQQKDHFSKIVVDAVLS 585
A++ AI+ ++ A IDN S P + R L A T +SSK++ Q K+HF+++ VDAVL
Sbjct: 128 IATKTAIDALR--ASSIDNSSDPAKFRSDLENIARTTLSSKILSQNKNHFAQLAVDAVLR 185
Query: 586 LDTPLLPLDMIGIKKV 633
L LD I I K+
Sbjct: 186 LKGS-TNLDNIQIIKI 200
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 138 bits (335), Expect = 5e-34
Identities = 68/177 (38%), Positives = 116/177 (65%)
Frame = +1
Query: 58 REGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLL 237
+E + G + S+I A + V + VRT+LGPRG+DK+++ +G+ ++NDGATI+ +
Sbjct: 24 QEKKRRLHGIDAVKSHILATKTVANIVRTSLGPRGLDKILISPDGEITVTNDGATILDQM 83
Query: 238 DIIHPAAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTAS 417
++ H AK LV ++KSQD E+GDGTT VV+LAG +L++ + +++G+HP + A
Sbjct: 84 EVEHQIAKLLVQLSKSQDDEIGDGTTGVVVLAGALLEQAEALIDKGIHPIRIADGYEKAC 143
Query: 418 RLAIEKIKEQAVKIDNKSPEEQRDLLLKCASTAMSSKLIHQQKDHFSKIVVDAVLSL 588
++A++ + + +D SPE + L + A T++ SK++ + DHF+ I VDAVLS+
Sbjct: 144 QVAVKHLDAISDVVD-FSPENTTN-LFRSAKTSLGSKVVSKAHDHFANIAVDAVLSV 198
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 130 bits (315), Expect = 1e-31
Identities = 72/207 (34%), Positives = 118/207 (57%), Gaps = 6/207 (2%)
Frame = +1
Query: 34 MQPQILLLREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISND 213
MQ + ++ ++ G +SNI A + V D +RT LGPR M K+++D G +++ND
Sbjct: 1 MQSPVFVMNTNGNRQVGHKAQMSNIQAAKAVADVIRTCLGPRAMLKMLLDPVGSVLLTND 60
Query: 214 GATIMKLLDIIHPAAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVL 393
G I++ +++ HPAAK+++++A++QD EVGDGTTSV+ILAGEIL P ++ +HP V+
Sbjct: 61 GHAILREIEVAHPAAKSMIELARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVVM 120
Query: 394 IRAVRTASRLAIEKIKEQAVKIDNKSPEEQRDLLLKCASTAMSSKLIHQQKD---HFSKI 564
IR+ + A A+ I E + ++ E L+ C T KL+ + D H +
Sbjct: 121 IRSFKQALEDALSIIDEITLPVNVDDNAEMFRLIRTCIGT----KLVARWSDLMCHLALR 176
Query: 565 VVDAVLSLDTPLLPLDM---IGIKKVP 636
V V S + +D+ ++KVP
Sbjct: 177 AVRTVASTSNGRMEIDIKRYARVEKVP 203
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 107 bits (256), Expect = 2e-24
Identities = 65/199 (32%), Positives = 112/199 (56%), Gaps = 5/199 (2%)
Frame = +1
Query: 52 LLREGTDQTQG-KPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIM 228
L REG QG + ++ N NA + + + RT+LGP G +K++V+H + ++ND ATI+
Sbjct: 13 LFREGYRIMQGVEDAVIRNCNAIRELSEITRTSLGPNGKNKIVVNHLQQTFLTNDAATII 72
Query: 229 KLLDIIHPAAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVR 408
+ L++IHPAAK +VD + Q+ E+GD VV+ GE+L + + + G+ P + +
Sbjct: 73 RELEVIHPAAKLVVDATQQQENELGDAANFVVVFTGELLAKAENMIRMGLTPLEIAKGYE 132
Query: 409 TASRLAIEKIKE-QAVKIDNKSPEEQRDLLLKCASTAMSSKLIHQQKDHFSKIVVDAVLS 585
A +E ++E A KI+ E++ L+K T +SSK + +D S +V A+L+
Sbjct: 133 MALSHTMEVLEEICADKIETVESEKE---LIKAIRTCISSKQ-YGNEDFLSDLVAKAILT 188
Query: 586 L---DTPLLPLDMIGIKKV 633
+ D +D I + K+
Sbjct: 189 VLPKDPSKFNVDNIRVVKI 207
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 105 bits (252), Expect = 5e-24
Identities = 60/188 (31%), Positives = 102/188 (54%)
Frame = +1
Query: 52 LLREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMK 231
LL + Q L NI+A + D +++ LGP G K++VD G ++ DG ++
Sbjct: 4 LLNPKAESIQRAQALQVNISAAIGLQDVLKSNLGPTGTTKMLVDGAGAIKLTKDGKVLLT 63
Query: 232 LLDIIHPAAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRT 411
+ I +P A + A +QD GDGTTSV +L GE+LK+ + ++ EG+HP ++
Sbjct: 64 EMQIQNPTASCIAKAATAQDDATGDGTTSVCLLVGELLKQAELYIREGLHPSLISDGFNL 123
Query: 412 ASRLAIEKIKEQAVKIDNKSPEEQRDLLLKCASTAMSSKLIHQQKDHFSKIVVDAVLSLD 591
A A+ + + K D E R++LL A T++S+K+ + + + VVDA+L++
Sbjct: 124 AKNEALTFL--DSFKTDF---EVDREVLLNVAKTSLSTKISSKVVESLAPAVVDAILTIR 178
Query: 592 TPLLPLDM 615
P P+D+
Sbjct: 179 RPDEPIDL 186
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 51.2 bits (117), Expect = 1e-07
Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 4/120 (3%)
Frame = +1
Query: 133 AVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIHP----AAKTLVDIAKSQDAEV 300
AV TLGP+G + LI G I+ DG T+ + + + A+ + D+A +
Sbjct: 57 AVSVTLGPKGRNVLIDQPFGSPKITKDGVTVARSVSLKDKFENLGARLVQDVASKTNEVA 116
Query: 301 GDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDNKSPEE 480
GDGTT+ +L I V G +P L R ++ A +E + QA K D + EE
Sbjct: 117 GDGTTTATVLTRAIFSETVRNVAAGCNPMDLRRGIQLAVDNVVEFL--QANKRDITTSEE 174
>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1141
Score = 28.3 bits (60), Expect = 0.98
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +1
Query: 478 EQRDLL---LKCASTAMSSKLIHQQKDHFSKIVVDAVLSLDTPL 600
EQ D L LKC +S+LI +H + + V SLDTP+
Sbjct: 571 EQSDTLRAALKCIGEVRNSRLITHYLEHGNLDIPPEVSSLDTPI 614
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.9 bits (59), Expect = 1.3
Identities = 22/100 (22%), Positives = 39/100 (39%)
Frame = +1
Query: 67 TDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDII 246
T T + SN N+ LV D + P + + + + N A+ + +L+
Sbjct: 218 TTSTNTSTVIPSNPNSVFLV-DCTHSQC-PTDLPNIATTQHSLRYLDNASASAITVLERT 275
Query: 247 HPAAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFV 366
HPAA + + S + D + + + K PFV
Sbjct: 276 HPAASSTMATESSHQSPSADSQAEELSKSQRVAKDDDPFV 315
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 26.6 bits (56), Expect = 3.0
Identities = 11/48 (22%), Positives = 23/48 (47%)
Frame = +1
Query: 451 VKIDNKSPEEQRDLLLKCASTAMSSKLIHQQKDHFSKIVVDAVLSLDT 594
V ++N PE ++ + C+ ++ Q DH ++V + + L T
Sbjct: 486 VYLENNDPEVRKTASITCSQLFARDPILSQTSDHAIQVVAEVLEKLLT 533
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 26.2 bits (55), Expect = 4.0
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +1
Query: 367 EEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDNKSPEEQRDLLLK 501
E+ V +L RA +L I+ QA K DNKS E+R+ L+
Sbjct: 863 EKSVEENILARA---QYKLDIDGKVIQAGKFDNKSTPEEREAFLR 904
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 25.8 bits (54), Expect = 5.2
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +1
Query: 352 LKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDNKSPEEQRDLLLK 501
L+ E+ + +L RA +L ++ QA K DNKS E+R+ L+
Sbjct: 1309 LRLITEKSIEENILSRA---QYKLDLDGKVIQAGKFDNKSTPEEREAFLR 1355
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 25.8 bits (54), Expect = 5.2
Identities = 16/56 (28%), Positives = 31/56 (55%)
Frame = -2
Query: 434 FSMASLDAVLTALIRTRG*TPSSTNGFNLFRISPANITTEVVPSPTSAS*DFAIST 267
F+ + + +T+L+ + SS++ +L S A +T+ SPTS+S A+S+
Sbjct: 71 FTSPASSSFITSLVSSSS-QQSSSSSASLTSSSSATLTSSSSASPTSSSSSHALSS 125
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.8 bits (54), Expect = 5.2
Identities = 25/86 (29%), Positives = 43/86 (50%)
Frame = -2
Query: 377 TPSSTNGFNLFRISPANITTEVVPSPTSAS*DFAISTRVLAAG*MISSSFMIVAPSFDIT 198
T SST ++ ++ + PTS+S DF+ S +++G ISSS + +F
Sbjct: 521 TSSSTPSSSIISSPMTSVLSSSSSIPTSSSSDFSSSITTISSG--ISSS--SIPSTFSSV 576
Query: 197 AFPL*STISLSIPRGPRVVLTASTTS 120
+ L S S S P + +++S+TS
Sbjct: 577 SSILSS--STSSPSSTSLSISSSSTS 600
>SPBC582.07c |rpn7||19S proteasome regulatory subunit
Rpn7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 409
Score = 25.4 bits (53), Expect = 6.9
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Frame = +1
Query: 328 LAGEILKRLKPFVEEG--VHPRVLIRAVRTASRLAIEKIKEQAVKIDNKSPEEQRDLLLK 501
+ G++L++LKP +E+G + ++A + ++I A DLLL
Sbjct: 167 VVGQLLEKLKPLIEKGGDWERKNRLKAYQGIYLMSIRNFSGAA------------DLLLD 214
Query: 502 CASTAMSSKLIHQQKDHFSKIVVDAVLSLD 591
C ST S++L+ D V+ +SLD
Sbjct: 215 CMSTFSSTELL-PYYDVVRYAVISGAISLD 243
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 25.4 bits (53), Expect = 6.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 630 LLDSNHVERQKWSVQRQDSINNNLREVI 547
L DSNHV+ QK +DS N L +++
Sbjct: 56 LFDSNHVDGQKGDSVLRDSANAPLTDLM 83
>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 449
Score = 25.4 bits (53), Expect = 6.9
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = +1
Query: 388 VLIRAVRTASRLAIEKIKEQAVKIDNKSPEEQRDLLLKCASTAMSSKLIHQQKDHFSKIV 567
VLI + L +I Q ID DL+ AS A S+ ++++ + S+++
Sbjct: 221 VLIFDSKIIKFLPNSQIDAQLASIDKSIDGSVADLIQARASIAQRSEFLNEELEQLSQVL 280
Query: 568 VDAV 579
AV
Sbjct: 281 NQAV 284
>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 25.4 bits (53), Expect = 6.9
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +3
Query: 162 DGQADCRSQWKGGYI 206
DG+ +C S+WK Y+
Sbjct: 555 DGKVECNSKWKSWYV 569
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 25.0 bits (52), Expect = 9.1
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +1
Query: 340 ILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDNKSP 474
IL++L+PF + V L A+ SRL + + A+ +D P
Sbjct: 936 ILQKLQPFFTQEVFRTALDNAIGCISRLILH--NQNAIPVDQVLP 978
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,624,949
Number of Sequences: 5004
Number of extensions: 53742
Number of successful extensions: 182
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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