Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0050
(636 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P... 270 5e-73
At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit / TCP... 158 3e-39
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 151 3e-37
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 145 2e-35
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P... 132 1e-31
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 124 7e-29
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P... 112 2e-25
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P... 106 1e-23
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P... 102 2e-22
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 80 1e-15
At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha s... 64 1e-10
At5g56500.1 68418.m07051 chaperonin, putative similar to SWISS-P... 56 1e-08
At5g18820.1 68418.m02236 chaperonin, putative similar to SWISS-P... 56 2e-08
At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta su... 55 3e-08
At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta su... 55 3e-08
At3g13470.1 68416.m01695 chaperonin, putative similar SWISS-PROT... 54 8e-08
At3g13860.1 68416.m01751 chaperonin, putative similar to SWISS-P... 53 2e-07
At1g26230.1 68414.m03200 chaperonin, putative similar to SWISS-P... 52 3e-07
At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to... 49 3e-06
At2g33210.1 68415.m04069 chaperonin, putative similar to SWISS-P... 49 3e-06
At1g05940.1 68414.m00623 amino acid permease family protein low ... 32 0.37
At1g67760.1 68414.m07732 T-complex protein 1 epsilon subunit, pu... 31 0.48
At5g28250.1 68418.m03425 Ulp1 protease family protein contains P... 29 2.6
At4g16530.1 68417.m02502 expressed protein contains Pfam profile... 29 3.4
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 28 4.5
At5g64910.1 68418.m08165 expressed protein ; expression support... 27 7.9
At2g17790.1 68415.m02062 vacuolar protein sorting-associated pro... 27 7.9
>At3g11830.1 68416.m01450 chaperonin, putative similar to
SWISS-PROT:P80313 T-complex protein 1, eta subunit
(TCP-1-eta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 557
Score = 270 bits (662), Expect = 5e-73
Identities = 136/201 (67%), Positives = 162/201 (80%)
Frame = +1
Query: 34 MQPQILLLREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISND 213
MQPQI+LL+EGTD +QGK QLVSNINAC V D VRTTLGPRGMDKLI D G ISND
Sbjct: 5 MQPQIILLKEGTDTSQGKAQLVSNINACTAVGDVVRTTLGPRGMDKLIHDDKGSVTISND 64
Query: 214 GATIMKLLDIIHPAAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVL 393
GATIMKLLDI+HPAAK LVDIAKSQD+EVGDGTT+VV+LA E LK KPF+E+GVH + L
Sbjct: 65 GATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLKEAKPFIEDGVHAQNL 124
Query: 394 IRAVRTASRLAIEKIKEQAVKIDNKSPEEQRDLLLKCASTAMSSKLIHQQKDHFSKIVVD 573
IR+ RTAS LAI K+KE AV I+ KS EE++ LL KCA+T +SSKLI +K+ F+ +VVD
Sbjct: 125 IRSYRTASTLAIAKVKELAVSIEGKSVEEKKGLLAKCAATTLSSKLIGGEKEFFATMVVD 184
Query: 574 AVLSLDTPLLPLDMIGIKKVP 636
AV+++ L++IGIKKVP
Sbjct: 185 AVMAIGND-DRLNLIGIKKVP 204
>At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit /
TCP-1-alpha / chaperonin (CCT1) identical to
SWISS-PROT:P28769- T-complex protein 1, alpha subunit
(TCP-1-alpha) [Arabidopsis thaliana]
Length = 545
Score = 158 bits (383), Expect = 3e-39
Identities = 81/173 (46%), Positives = 115/173 (66%)
Frame = +1
Query: 70 DQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIH 249
D+ G+ N+ ACQ V + V+T+LGP G+DK++VD G I+NDGATI+++L++ H
Sbjct: 13 DRQSGQDVRTQNVMACQAVSNIVKTSLGPVGLDKMLVDDIGDVTITNDGATILRMLEVEH 72
Query: 250 PAAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAI 429
PAAK LV++A+ QD EVGDGTTSVVI+A E+LKR V +HP +I R A R +
Sbjct: 73 PAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMRESC 132
Query: 430 EKIKEQAVKIDNKSPEEQRDLLLKCASTAMSSKLIHQQKDHFSKIVVDAVLSL 588
+ I+E K+ K + + L+ CA T+MSSKLI D F+ +VV+AVLS+
Sbjct: 133 KYIEE---KLVTKVEKLGKVPLINCAKTSMSSKLISGDSDFFANLVVEAVLSV 182
>At3g18190.1 68416.m02314 chaperonin, putative similar to
SWISS-PROT:P50991- T-complex protein 1, delta subunit
(TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 536
Score = 151 bits (367), Expect = 3e-37
Identities = 78/180 (43%), Positives = 121/180 (67%), Gaps = 2/180 (1%)
Frame = +1
Query: 100 SNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIHPAAKTLVDIA 279
+NIN+ + V DAVRT+LGP+GMDK+I NG+ +I+NDGATI+ ++++ PAAK LV+++
Sbjct: 32 ANINSARAVSDAVRTSLGPKGMDKMISTANGEVIITNDGATILNKMEVLQPAAKMLVELS 91
Query: 280 KSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKI 459
KSQD+ GDGTT+VV++AG +LK + + G+HP V+ ++ A AI+ + AV +
Sbjct: 92 KSQDSAAGDGTTTVVVIAGALLKECQSLLTNGIHPTVISDSLHKACGKAIDILTAMAVPV 151
Query: 460 DNKSPEEQRDLLLKCASTAMSSKLIHQQKDHFSKIVVDAVLSLDTPLLP--LDMIGIKKV 633
+ RD L+K AST+++SK++ Q + + VDAVLS+ P P +D+ IK V
Sbjct: 152 E----LTDRDSLVKSASTSLNSKVVSQYSTLLAPLAVDAVLSVIDPEKPEIVDLRDIKIV 207
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 145 bits (351), Expect = 2e-35
Identities = 79/182 (43%), Positives = 117/182 (64%), Gaps = 3/182 (1%)
Frame = +1
Query: 52 LLREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHN-GKAV-ISNDGATI 225
+ ++ + +G+ +++ + D V++TLGP+GMDK++ G AV ++NDGATI
Sbjct: 6 IFKDDASEEKGERARMASFVGAMAISDLVKSTLGPKGMDKILQSTGRGHAVTVTNDGATI 65
Query: 226 MKLLDIIHPAAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAV 405
+K L I +PAAK LVDI+K QD EVGDGTTSVV+LAGE+L+ + V +HP +I
Sbjct: 66 LKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVASKIHPMTIIAGY 125
Query: 406 RTASRLAIEKIKEQAVKIDNK-SPEEQRDLLLKCASTAMSSKLIHQQKDHFSKIVVDAVL 582
R AS A + ++ IDNK + E+ R LLK A T + SK++ Q K+HF+++ VDAV
Sbjct: 126 RMASECARNALLKRV--IDNKDNAEKFRSDLLKIAMTTLCSKILSQDKEHFAEMAVDAVF 183
Query: 583 SL 588
L
Sbjct: 184 RL 185
>At5g26360.1 68418.m03151 chaperonin, putative similar to
SWISS-PROT:P50143- T-complex protein 1, gamma subunit
(TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 555
Score = 132 bits (320), Expect = 1e-31
Identities = 73/200 (36%), Positives = 115/200 (57%), Gaps = 1/200 (0%)
Frame = +1
Query: 34 MQPQILLLREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISND 213
M +L+L + + G NI A + V D +RTTLGPR M K+++D G V++ND
Sbjct: 1 MHAPVLVLSDSLKRESGSKVHHGNIQASKAVADIIRTTLGPRSMLKMLLDAGGGIVVTND 60
Query: 214 GATIMKLLDIIHPAAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVL 393
G I++ LD+ HPAAK++++++++QD EVGDGTTSV++LAGE+L + F+E+ HP V+
Sbjct: 61 GNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEAFLEKNYHPTVI 120
Query: 394 IRAVRTASRLAIEKIKEQAVKIDNKSPEEQRDLLLKCASTAMSSKLIHQQKDHFSKIVVD 573
RA A +I + + A+ ID + L+ C T +S Q D + + +D
Sbjct: 121 CRAYIKALEDSIAVLDKIAMSIDINDRSQVLGLVKSCIGTKFTS----QFGDLIADLAID 176
Query: 574 AVLSLDTPL-LPLDMIGIKK 630
A ++ L L + IKK
Sbjct: 177 ATTTVGVDLGQGLREVDIKK 196
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 124 bits (298), Expect = 7e-29
Identities = 65/190 (34%), Positives = 119/190 (62%), Gaps = 2/190 (1%)
Frame = +1
Query: 25 FNKMQPQILLLREGTDQTQ--GKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKA 198
F++ ++LRE +T+ G +NI A + V +R++LGP+GMDK++ +G
Sbjct: 5 FDEFGRPFIILREQDQKTRLRGIDAQKANIAAGKAVARILRSSLGPKGMDKMLQGPDGDI 64
Query: 199 VISNDGATIMKLLDIIHPAAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGV 378
I+NDGATI++ +D+ + AK +V++++SQD E+GDGTT VV++AG +L++ + ++ G+
Sbjct: 65 TITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGI 124
Query: 379 HPRVLIRAVRTASRLAIEKIKEQAVKIDNKSPEEQRDLLLKCASTAMSSKLIHQQKDHFS 558
HP + ASR+A+E ++ A K + + L++ T +SSK++++ K +
Sbjct: 125 HPIRIAEGYEMASRVAVEHLERIAQKFE--FDVNNYEPLVQTCMTTLSSKIVNRCKRSLA 182
Query: 559 KIVVDAVLSL 588
+I V AVL++
Sbjct: 183 EIAVKAVLAV 192
>At3g03960.1 68416.m00415 chaperonin, putative similar to
SWISS-PROT:P42932- T-complex protein 1, theta subunit
(TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 549
Score = 112 bits (270), Expect = 2e-25
Identities = 65/189 (34%), Positives = 108/189 (57%), Gaps = 4/189 (2%)
Frame = +1
Query: 34 MQPQIL--LLREGTDQTQGKPQ-LVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVI 204
MQP + +L+EG G + ++ NI AC+ + RT+LGP GM+K++++H K +
Sbjct: 6 MQPYGIQSMLKEGYRHLSGLDEAVIKNIEACKELSTITRTSLGPNGMNKMVINHLDKLFV 65
Query: 205 SNDGATIMKLLDIIHPAAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHP 384
+ND ATI+ L+I HPAAK LV AK+Q E+GDG + AGE+L+ + + G+HP
Sbjct: 66 TNDAATIVNELEIQHPAAKLLVLAAKAQQEEIGDGANLTISFAGELLQNAEELIRMGLHP 125
Query: 385 RVLIRAVRTASRLAIEKIKEQAVKIDNKSPE-EQRDLLLKCASTAMSSKLIHQQKDHFSK 561
+I A A+E I EQ V+ +++ + +D ++ A++SK Q+ +
Sbjct: 126 SEIISGYTKAVSKAVE-ILEQLVETGSETMDVRNKDEVISRMRAAVASKQFGQE-EIICS 183
Query: 562 IVVDAVLSL 588
+V DA + +
Sbjct: 184 LVTDACIQV 192
>At3g02530.1 68416.m00241 chaperonin, putative similar to
SWISS-PROT:P80317- T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 106 bits (254), Expect = 1e-23
Identities = 56/174 (32%), Positives = 98/174 (56%)
Frame = +1
Query: 106 INACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIHPAAKTLVDIAKS 285
INA + + D +++ LGP+G K++V +G ++ DG T++K + I +P A + A +
Sbjct: 23 INAAKGLQDVLKSNLGPKGTIKMLVGGSGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVA 82
Query: 286 QDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDN 465
QD GDGTTS VI GE++K+ + ++EG+HPRVL+ A R ++ + +
Sbjct: 83 QDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLDTFKTPV-V 141
Query: 466 KSPEEQRDLLLKCASTAMSSKLIHQQKDHFSKIVVDAVLSLDTPLLPLDMIGIK 627
E +++L A T + +KL D + IVV++VL + P P+D+ ++
Sbjct: 142 MGDEPDKEILKMVARTTLRTKLYEGLADQLTDIVVNSVLCIRKPQEPIDLFMVE 195
>At5g16070.1 68418.m01878 chaperonin, putative similar to
SWISS-PROT:P80317 T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 102 bits (245), Expect = 2e-22
Identities = 55/174 (31%), Positives = 97/174 (55%)
Frame = +1
Query: 106 INACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIHPAAKTLVDIAKS 285
INA + + D +++ LGP+G K++V +G ++ DG T++K + I +P A + A +
Sbjct: 23 INAAKGLQDVLKSNLGPKGTIKMLVGGSGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVA 82
Query: 286 QDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDN 465
QD GDGTTS VI GE++K+ + ++EG+HPRVL+ A R ++ + +
Sbjct: 83 QDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLDNFKTPV-V 141
Query: 466 KSPEEQRDLLLKCASTAMSSKLIHQQKDHFSKIVVDAVLSLDTPLLPLDMIGIK 627
E +++L A T + +KL D + IVV++VL + P +D+ ++
Sbjct: 142 MGDEVDKEILKMVARTTLRTKLYEGLADQLTDIVVNSVLCIRKPEEAIDLFMVE 195
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 79.8 bits (188), Expect = 1e-15
Identities = 39/118 (33%), Positives = 75/118 (63%)
Frame = +1
Query: 235 LDIIHPAAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTA 414
+D+ + AK +V++++SQD E+GDGTT VV++AG +L++ + ++ G+HP + A
Sbjct: 1 MDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMA 60
Query: 415 SRLAIEKIKEQAVKIDNKSPEEQRDLLLKCASTAMSSKLIHQQKDHFSKIVVDAVLSL 588
SR+A+E ++ A K + + L++ T +SSK++++ K ++I V AVL++
Sbjct: 61 SRVAVEHLERIAQKFE--FDVNNYEPLVQTCMTTLSSKIVNRCKRSLAEIAVKAVLAV 116
>At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha
subunit, chloroplast / 60 kDa chaperonin alpha subunit /
CPN-60 alpha identical to SWISS-PROT:P21238- RuBisCO
subunit binding-protein alpha subunit, chloroplast
precursor (60 kDa chaperonin alpha subunit, CPN-60
alpha) [Arabidopsis thaliana]
Length = 586
Score = 63.7 bits (148), Expect = 1e-10
Identities = 51/163 (31%), Positives = 84/163 (51%), Gaps = 6/163 (3%)
Frame = +1
Query: 124 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDI---IHPAAKTLV-DIAKSQD 291
+ D V TLGPRG + +++D G + NDG TI + +++ + A L+ ++A +
Sbjct: 68 LADCVGLTLGPRGRN-VVLDEFGSPKVVNDGVTIARAIELPNAMENAGAALIREVASKTN 126
Query: 292 AEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDNKS 471
GDGTT+ ILA EI+K V G +P L R + + IE+++++A
Sbjct: 127 DSAGDGTTTASILAREIIKHGLLSVTSGANPVSLKRGIDKTVQGLIEELQKKA------R 180
Query: 472 PEEQRDLLLKCAS-TAMSSKLIHQQ-KDHFSKIVVDAVLSLDT 594
P + RD + AS +A + LI D K+ D VLS+++
Sbjct: 181 PVKGRDDIRAVASISAGNDDLIGSMIADAIDKVGPDGVLSIES 223
>At5g56500.1 68418.m07051 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 597
Score = 56.4 bits (130), Expect = 1e-08
Identities = 30/118 (25%), Positives = 61/118 (51%), Gaps = 4/118 (3%)
Frame = +1
Query: 124 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIHPA----AKTLVDIAKSQD 291
+ D V TLGP+G + ++ G I NDG T+ + +++ P AK + A +
Sbjct: 74 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAASKTN 133
Query: 292 AEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDN 465
GDGTT+ V+LA ++ V G +P ++ R + ++ + ++K+ + ++++
Sbjct: 134 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTTKALVAELKKMSKEVED 191
>At5g18820.1 68418.m02236 chaperonin, putative similar to
SWISS-PROT:P08926- RuBisCO subunit binding-protein alpha
subunit, chloroplast precursor (60 kDa chaperonin alpha
subunit, CPN-60 alpha)[Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 575
Score = 56.0 bits (129), Expect = 2e-08
Identities = 34/79 (43%), Positives = 48/79 (60%), Gaps = 4/79 (5%)
Frame = +1
Query: 124 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMK---LLDIIHPAAKTLV-DIAKSQD 291
+ DAV TLGPRG + ++ + + VI NDG TI K L D I A TL+ ++A +
Sbjct: 55 LADAVSITLGPRGRNVVLAEKDTIKVI-NDGVTIAKSIELPDTIENAGATLIQEVAIKMN 113
Query: 292 AEVGDGTTSVVILAGEILK 348
GDGTT+ +ILA E++K
Sbjct: 114 ESAGDGTTTAIILAREMIK 132
>At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 55.2 bits (127), Expect = 3e-08
Identities = 30/118 (25%), Positives = 60/118 (50%), Gaps = 4/118 (3%)
Frame = +1
Query: 124 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIHP----AAKTLVDIAKSQD 291
+ D V TLGP+G + ++ G I NDG T+ + +++ P AK + A +
Sbjct: 78 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTN 137
Query: 292 AEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDN 465
GDGTT+ V+LA + V G +P ++ R + ++ + ++K+ + ++++
Sbjct: 138 DLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVTELKKMSKEVED 195
>At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 55.2 bits (127), Expect = 3e-08
Identities = 30/118 (25%), Positives = 60/118 (50%), Gaps = 4/118 (3%)
Frame = +1
Query: 124 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIHP----AAKTLVDIAKSQD 291
+ D V TLGP+G + ++ G I NDG T+ + +++ P AK + A +
Sbjct: 78 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTN 137
Query: 292 AEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDN 465
GDGTT+ V+LA + V G +P ++ R + ++ + ++K+ + ++++
Sbjct: 138 DLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVTELKKMSKEVED 195
>At3g13470.1 68416.m01695 chaperonin, putative similar
SWISS-PROT:P21240- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Arabidopsis thaliana]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 596
Score = 54.0 bits (124), Expect = 8e-08
Identities = 30/118 (25%), Positives = 59/118 (50%), Gaps = 4/118 (3%)
Frame = +1
Query: 124 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIHP----AAKTLVDIAKSQD 291
+ D V TLGP+G + ++ G I NDG T+ + +++ P AK + A +
Sbjct: 74 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTN 133
Query: 292 AEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDN 465
GDGTT+ V+LA + V G +P ++ R + ++ + ++K + ++++
Sbjct: 134 DLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVNELKLMSKEVED 191
>At3g13860.1 68416.m01751 chaperonin, putative similar to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana] ; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 572
Score = 52.8 bits (121), Expect = 2e-07
Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 4/123 (3%)
Frame = +1
Query: 124 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIHPA----AKTLVDIAKSQD 291
V +AV+ T+GP+G + +I G I+ DG T+ K + A A+ + +A + +
Sbjct: 53 VAEAVKVTMGPKGRNVIIESSYGGPKITKDGVTVAKSISFQAKAKNIGAELVKQVASATN 112
Query: 292 AEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDNKS 471
GDGTT +L IL V GV+ L + A + +K +AV I +
Sbjct: 113 KVAGDGTTCATVLTQAILIEGCKSVAAGVNVMDLRVGINMAIAAVVSDLKSRAVMI--ST 170
Query: 472 PEE 480
PEE
Sbjct: 171 PEE 173
>At1g26230.1 68414.m03200 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 611
Score = 52.0 bits (119), Expect = 3e-07
Identities = 28/119 (23%), Positives = 61/119 (51%), Gaps = 4/119 (3%)
Frame = +1
Query: 121 LVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIHPAAKTLVDIAKSQDAE- 297
+V + TLGP+G + ++ + G I NDG T++K +++ P V + + A+
Sbjct: 61 MVAKLLGVTLGPKGRNVVLQNKYGPPRIVNDGETVLKEIELEDPLENVGVKLVRQAGAKT 120
Query: 298 ---VGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDN 465
GDG+T+ +ILA ++ + G +P + R + ++ + ++K + +I++
Sbjct: 121 NDLAGDGSTTSIILAHGLITEGIKVISAGTNPIQVARGIEKTTKALVLELKSMSREIED 179
>At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana]
Length = 577
Score = 48.8 bits (111), Expect = 3e-06
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
Frame = +1
Query: 124 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLD----IIHPAAKTLVDIAKSQD 291
+ DAV+ T+GP+G + +I G ++ DG T+ K ++ I + A + +A + +
Sbjct: 53 LADAVKVTMGPKGRNVVIEQSWGAPKVTKDGVTVAKSIEFKDKIKNVGASLVKQVANATN 112
Query: 292 AEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQA 450
GDGTT +L I V G++ L R + A + +K +A
Sbjct: 113 DVAGDGTTCATVLTRAIFAEGCKSVAAGMNAMDLRRGISMAVDAVVTNLKSKA 165
>At2g33210.1 68415.m04069 chaperonin, putative similar to
SWISS-PROT:Q05046- chaperonin CPN60-2, mitochondrial
precursor (HSP60-2) [Cucurbita maxima]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 585
Score = 48.8 bits (111), Expect = 3e-06
Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Frame = +1
Query: 124 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLD----IIHPAAKTLVDIAKSQD 291
+ DAV+ T+GP+G + +I G ++ DG T+ K ++ I + A + +A + +
Sbjct: 54 LADAVKVTMGPKGRNVIIEQSWGAPKVTKDGVTVAKSIEFKDRIKNVGASLVKQVANATN 113
Query: 292 AEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQA 450
GDGTT +L I V G++ L R ++ A + ++ +A
Sbjct: 114 DVAGDGTTCATVLTRAIFTEGCKSVAAGMNAMDLRRGIKLAVDTVVTNLQSRA 166
>At1g05940.1 68414.m00623 amino acid permease family protein low
similarity to SP|P30823 High-affinity cationic amino
acid transporter-1 (CAT-1) {Rattus norvegicus}; contains
Pfam profile PF00324: Amino acid permease
Length = 569
Score = 31.9 bits (69), Expect = 0.37
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Frame = +1
Query: 169 KLIVD-HNGKAVISNDGATIMKLLDIIHPAAKTLVDIAKSQDAEVGDGTTSVVILAGEIL 345
+L++D H G A IS A+ L + PA K + + E+ G S+ ILA +L
Sbjct: 136 QLMLDYHIGAASISRSLASYAVALLELFPALKGSIPLWMGSGKELLGGLLSLNILAPILL 195
Query: 346 KRLKPFVEEGVHPRVLIRAVRTASRLAI 429
L + +GV + +V TA+++ I
Sbjct: 196 ALLTLVLCQGVRESSAVNSVMTATKVVI 223
>At1g67760.1 68414.m07732 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative similar to chaperonin containing TCP-1 (CCT)
epsilon subunit [Tetrahymena pyriformis] GI:15824416,
SP|P80316 T-complex protein 1, epsilon subunit
(TCP-1-epsilon) (CCT-epsilon) {Mus musculus}
Length = 142
Score = 31.5 bits (68), Expect = 0.48
Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Frame = +1
Query: 25 FNKMQPQILLLREGTDQTQ--GKPQLVSNINACQLVVDAVRTTLGPRGMDK 171
F++ ++LRE +T+ G +NI+A + V +R++LGP+GM+K
Sbjct: 5 FDEFGRPFIILREQDQKTRLKGIDAQKANISAGKAVARILRSSLGPKGMEK 55
>At5g28250.1 68418.m03425 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 939
Score = 29.1 bits (62), Expect = 2.6
Identities = 18/56 (32%), Positives = 32/56 (57%)
Frame = +1
Query: 175 IVDHNGKAVISNDGATIMKLLDIIHPAAKTLVDIAKSQDAEVGDGTTSVVILAGEI 342
+VD A I+++ AT++ + I T+VD+ DAE+ D T ++V + G+I
Sbjct: 480 VVDVQSDAEIADNTATVVDVQ--IADNTATVVDV--QSDAEIADNTATLVDVQGDI 531
>At4g16530.1 68417.m02502 expressed protein contains Pfam profile
PF04510: Family of unknown function (DUF577)
Length = 774
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +1
Query: 343 LKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDNKSPEEQ 483
LKR P E+G V+ AV ++ + +E ++ + K + + EE+
Sbjct: 616 LKRASPEAEKGKDEAVVAAAVVKSTAVVVESVESEEPKTEKEEDEER 662
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 28.3 bits (60), Expect = 4.5
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = -1
Query: 411 CSDCSDQNTRVNTFFNKRLQPLQNFTGQYHYRGGSIANLGILRL-CN-IHKSFSG 253
C D + +N+F NK+ P + Q Y G + L +L CN HK F G
Sbjct: 60 CPTREDADKVINSFHNKKTLPGASSPLQVKYADGELERLDVLDCSCNPEHKLFVG 114
>At5g64910.1 68418.m08165 expressed protein ; expression supported
by MPSS
Length = 487
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 544 KDHFSKIVVDAVLSLDTPLLPLDMIGIKKV 633
KD ++V V+ +D+P+ P D IG+ V
Sbjct: 245 KDENKDVLVPVVVCIDSPIPPSDEIGVASV 274
>At2g17790.1 68415.m02062 vacuolar protein sorting-associated
protein 35 family protein / VPS35 family protein similar
to vacuolar protein sorting 35 [Mus musculus]
GI:11875394; contains Pfam profile PF03635: Vacuolar
protein sorting-associated protein 35
Length = 830
Score = 27.5 bits (58), Expect = 7.9
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +1
Query: 259 KTLVDIAKS--QDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRL 423
K + IA S Q A G+T V L EIL + F E+GV P++ + +V + +L
Sbjct: 732 KRALKIANSAQQVANTARGSTGSVTLFIEILNKYLYFYEKGV-PQITVESVESLIKL 787
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,065,754
Number of Sequences: 28952
Number of extensions: 296246
Number of successful extensions: 905
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -