Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0049
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    28   1.0  
SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit Ssr3|Schizos...    28   1.3  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.1  
SPAC56F8.14c |mug115||sequence orphan|Schizosaccharomyces pombe|...    25   7.2  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    25   7.2  
SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce...    25   7.2  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    25   7.2  
SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.5  
SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces p...    25   9.5  

>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = -1

Query: 599 WVLDNE*FRNFHSIRV--MSTHLH 534
           W+LDN  FRN H +    ++THLH
Sbjct: 357 WLLDNSFFRNRHRLLAIHLATHLH 380


>SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit
           Ssr3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 425

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 617 VLVYKRWVLDNE*FRNFHSIRVMSTHLHPLVCSATSWHQ 501
           ++V KR+ L +   RN H  R++  ++H  V +  SW Q
Sbjct: 60  LIVRKRFDLQDSLSRNSHKTRILRMYIHSTVAN-QSWQQ 97


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 585  RVIPEFPQHSSNEYSPPSSGMFSNFLAPGLGP 490
            +V+P  P H+     P + GM +N  AP   P
Sbjct: 1445 QVVPPAPMHAVAPVQPKAPGMVTNAPAPSSAP 1476


>SPAC56F8.14c |mug115||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 323 CYIVMHRILRSKCIVSDSKYQLQG 252
           CY V H  LR KC+V     +++G
Sbjct: 5   CYAVYHPALRLKCLVRKGLGKIKG 28


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2111

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 217 FLGMLVNPSGLCPCNWYLESDTM 285
           + G  ++ +GL PC +YL SD M
Sbjct: 413 YCGANLDRNGLRPCRFYLTSDDM 435


>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 851

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -2

Query: 415 EQQTFHYTNTVPARAPGRRTGH 350
           EQ+  HY NTVP    G    H
Sbjct: 45  EQRAKHYLNTVPTSKDGNTKAH 66


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = -1

Query: 320 YIVMHRILRSKCIVSDSKYQLQGHNPLGFTSIPKNTHSKLVASLLLPH 177
           Y  +  +LRS     +++  L+GH    F+S+ KNT   ++   +L +
Sbjct: 35  YAQLCDVLRSAQSEIEARRDLKGHIKRCFSSVDKNTEKLILKQQVLAY 82


>SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 16  RVLCCSEYLRNFLKGFTY*IVTID*KVSQKFFTHILKCCS 135
           ++  C+EY+R   K F Y I+     VS     H + CC+
Sbjct: 47  KIALCNEYIRFLAKCFLY-ILRCMSTVSLLSSAHKMNCCN 85


>SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 303

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 579 SLVIQNPTLIH*DLGFKGW 635
           S+V++ PT+ +  LGFK W
Sbjct: 99  SVVLREPTMTYNTLGFKTW 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,678,935
Number of Sequences: 5004
Number of extensions: 53622
Number of successful extensions: 147
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)