Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0049
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_08_0027 + 27775552-27775770,27776437-27778483,27778589-27778965 30 1.8
03_01_0104 - 830884-831282,831511-832205,832368-833387,833570-83... 30 1.8
11_08_0010 + 27605105-27607919,27607954-27608013,27608110-27608495 29 3.2
01_06_0355 + 28657833-28660665,28660762-28661126 29 4.2
11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008 28 7.4
11_08_0032 - 27807489-27807497,27807641-27807684,27808046-278081... 28 7.4
08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468... 28 7.4
06_03_0516 + 21661696-21662490 28 7.4
07_03_1507 - 27228032-27228742 27 9.8
05_07_0036 - 27226777-27227103 27 9.8
>11_08_0027 + 27775552-27775770,27776437-27778483,27778589-27778965
Length = 880
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -3
Query: 537 PSSGMFSNFLAPGLGPLTADSALCSVSLIGFPATHCVITDTNNRH 403
P G+F+N L L +S LC + +GFP + NN H
Sbjct: 487 PEGGVFANIT---LQYLVGNSGLCGAARLGFPPCQTTSPNRNNGH 528
>03_01_0104 -
830884-831282,831511-832205,832368-833387,833570-833696,
834342-834709,834780-835059,835137-835466
Length = 1072
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -2
Query: 523 VQQLLGTRTGTPD--GGQRPLQRLTHRFPGHALRYH 422
V+Q++GT G D GG P + T FPG LR H
Sbjct: 880 VEQVMGTGGGWQDQIGGLYPGIKCTQSFPGQPLRLH 915
>11_08_0010 + 27605105-27607919,27607954-27608013,27608110-27608495
Length = 1086
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -3
Query: 537 PSSGMFSNFLAPGLGPLTADSALCSVSLIGFPATHCVITDTNNR 406
P G+FSN L L +S LC V+ +G P+ + N R
Sbjct: 701 PKGGVFSNIT---LQSLVGNSGLCGVARLGLPSCQTTSSKRNGR 741
>01_06_0355 + 28657833-28660665,28660762-28661126
Length = 1065
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -3
Query: 537 PSSGMFSNFLAPGLGPLTADSALCSVSLIGFPATHC 430
P+ G+FSN L L ++ALC + +GFP HC
Sbjct: 670 PNGGVFSNIT---LQSLRGNTALCGLPRLGFP--HC 700
>11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008
Length = 1058
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -3
Query: 537 PSSGMFSNFLAPGLGPLTADSALCSVSLIGFPATHCVITDTNNRH 403
PS G+FSN L L ++ LC +GFPA T +H
Sbjct: 648 PSGGVFSNIT---LQSLMGNARLCGAQHLGFPACLEKSHSTRRKH 689
>11_08_0032 -
27807489-27807497,27807641-27807684,27808046-27808168,
27810770-27810983,27811382-27811530,27811719-27812618,
27812964-27814659
Length = 1044
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -3
Query: 537 PSSGMFSNFLAPGLGPLTADSALCSVSLIGFPATHCVITDTNNRH 403
PS G+FSN + L ++ LC +GFPA T +H
Sbjct: 593 PSGGIFSNIT---MQSLMGNAGLCGAPRLGFPACLEKSDSTRTKH 634
>08_01_0539 +
4679392-4681282,4682060-4682104,4682403-4683560,
4683834-4684204,4684290-4684835,4684927-4685027,
4685117-4685933,4686025-4686213,4686313-4686384,
4686477-4686587,4686647-4686652,4686694-4686794,
4687714-4687813,4687891-4687986,4688157-4688273,
4688367-4688492,4688566-4688619,4688745-4688992,
4689087-4689195,4689284-4689583,4689799-4689963
Length = 2240
Score = 27.9 bits (59), Expect = 7.4
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -2
Query: 457 THRFPGHALRYH*HEQQTFHYTNTVP 380
TH H+ ++H H+ Q+ H + +VP
Sbjct: 848 THEGSSHSKKHHEHDSQSLHKSKSVP 873
>06_03_0516 + 21661696-21662490
Length = 264
Score = 27.9 bits (59), Expect = 7.4
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1
Query: 352 GRSYAPARGPAQCWC 396
GRS+ P G A CWC
Sbjct: 238 GRSWKPGTGTAPCWC 252
>07_03_1507 - 27228032-27228742
Length = 236
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -1
Query: 497 WDP*RRTAPSAASHSSVSR 441
WDP RR P+A S S+V R
Sbjct: 196 WDPQRRPPPAACSRSTVDR 214
>05_07_0036 - 27226777-27227103
Length = 108
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +2
Query: 353 AGPTPRRAGRHSVGVVKCLLFVSVITQCVAGKPMSETLQRALS 481
A P PR G H++ + LL SV+ VAGKP + AL+
Sbjct: 13 AAPMPR--GAHALYGLLALLGASVVVWSVAGKPPAAHAGHALA 53
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,331,665
Number of Sequences: 37544
Number of extensions: 398204
Number of successful extensions: 1252
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1252
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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