Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0049
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4658| Best HMM Match : HTH_psq (HMM E-Value=0)                      32   0.47 
SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0)                   29   2.5  
SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_11518| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_59672| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_53740| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             28   7.6  
SB_50709| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_4658| Best HMM Match : HTH_psq (HMM E-Value=0)
          Length = 1595

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 18/44 (40%), Positives = 22/44 (50%)
 Frame = -3

Query: 564 QHSSNEYSPPSSGMFSNFLAPGLGPLTADSALCSVSLIGFPATH 433
           QHS N+   PS G  S  +    G +TADS  CS+S    P  H
Sbjct: 515 QHSKNDNHSPSFGTSSAAICNLQGSITADSP-CSLSAPSLPLVH 557


>SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 2675

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 197  QLVLSECF*ECL*TQVDCAPVTGTW 271
            +++++EC  ECL +  DC P T  W
Sbjct: 1908 EILITECLPECLVSPWDCLPCTAHW 1932


>SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1465

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +2

Query: 242 VDCAPVTGTWSRTRCIWISRCGASQCSSVVVKRDPVMAGPTPRRAGRHSVGV 397
           +   PV G WS     W S C  S CS+  + R    + P+P+  G++  GV
Sbjct: 613 IHACPVHGGWSEWTT-W-SPCSVS-CSNGTISRTRHCSNPSPKYGGKNCSGV 661


>SB_11518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1144

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 508 GTRTGTPDGGQRPLQRLTHRFPGHALR 428
           G   G+P G  +PL+ + HR PG ++R
Sbjct: 893 GGGRGSPRGSPQPLENIYHRKPGQSIR 919


>SB_59672| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 198

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -2

Query: 460 LTHRFPGHALRYH*HEQQTFHYTNTVPAR 374
           +T   P H L YH H   T HY  T+  R
Sbjct: 64  ITLTTPAHTLHYHTHVATTQHYNITLTTR 92


>SB_53740| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 1980

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 385  QCWCSEMSVVRVSDNAVRGRETDE*DAAE 471
            QCWC +M+ + +  +  RG   D   AA+
Sbjct: 933  QCWCVDMNGIEIPGSVTRGHRPDCKKAAQ 961


>SB_50709| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 953

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +3

Query: 294 SQDAVHHNVAASWSNETPSWPVLRPGARAGT 386
           + D   H++A +W + T +W V + G   G+
Sbjct: 736 ANDGKWHHMAFTWKSSTGAWKVYKDGTNVGS 766


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,078,827
Number of Sequences: 59808
Number of extensions: 461373
Number of successful extensions: 1387
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1382
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)