Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0049
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40210.1 68418.m04879 nodulin MtN21 family protein similar to...    32   0.38 
At2g25730.1 68415.m03084 expressed protein                             29   3.5  
At5g02990.1 68418.m00243 kelch repeat-containing F-box family pr...    28   4.7  
At5g10560.1 68418.m01222 glycosyl hydrolase family 3 protein bet...    28   6.2  
At3g01990.1 68416.m00158 ACT domain-containing protein (ACR6) co...    28   6.2  
At3g01370.1 68416.m00059 expressed protein contains Pfam domain,...    28   6.2  
At3g28070.1 68416.m03503 nodulin MtN21 family protein similar to...    27   8.2  

>At5g40210.1 68418.m04879 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 339

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 21/59 (35%), Positives = 31/59 (52%)
 Frame = -3

Query: 522 FSNFLAPGLGPLTADSALCSVSLIGFPATHCVITDTNNRHFTTPTLCRPARRGVGPAMT 346
           F +F +  L PLT  S LC++ ++G  A+   I   N   +++PTL   A   V PA T
Sbjct: 61  FFSFRSRSLPPLTF-SILCNMGILGLIASAFQILGYNGIKYSSPTL-SSAMSNVNPAFT 117


>At2g25730.1 68415.m03084 expressed protein 
          Length = 2464

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +1

Query: 391 WCSEMSVVRVSDNAVRGRETDE*DAAEGAVRRQGSQSW 504
           W S+   +R+ ++++ G +TDE + A  A      +SW
Sbjct: 452 WTSDSQALRLEESSLYGNQTDELELASFAACVNSGKSW 489


>At5g02990.1 68418.m00243 kelch repeat-containing F-box family
           protein contains Pfam profiles PF01344: Kelch motif,
           PF00646: F-box domain
          Length = 548

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 340 RPRHGRSYAPARGPAQCWCSEMSVVRVSDNAVRGR 444
           RPR GRS++  +   + WC+E+SV R     + GR
Sbjct: 497 RPR-GRSHSTKKCKTEIWCAEISVERRGLGELWGR 530


>At5g10560.1 68418.m01222 glycosyl hydrolase family 3 protein
           beta-xylosidase, Aspergllus nidulans, EMBL:ANXLND
          Length = 792

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 19/49 (38%), Positives = 23/49 (46%)
 Frame = +1

Query: 235 NPSGLCPCNWYLESDTMHLDLKMRCITM*QRRGQTRPRHGRSYAPARGP 381
           NP G  P  WY ES T   D+ M  + M  R   +R   GR+Y    GP
Sbjct: 591 NPGGRLPTTWYPESFT---DVAMSDMHM--RANSSRGYPGRTYRFYTGP 634


>At3g01990.1 68416.m00158 ACT domain-containing protein (ACR6)
           contains Pfam ACT domain PF01842; similar to uridylyl
           transferase-like proteins GB:AAD20075, GB:AAC00631
           [Arabidopsis thaliana]
          Length = 433

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -3

Query: 441 ATHCVITDTNNRHFTTPTLCRPARRGVGPAMTGSRLTTTLLHCDAPHLEIQMHRV 277
           +TH  ITD          LC   R       +GSR   T+  C   H E ++H++
Sbjct: 168 STHSAITDPIRLSTIKELLCNVVRTN-----SGSRAAKTVFSCSDTHRERRLHQI 217


>At3g01370.1 68416.m00059 expressed protein contains Pfam domain,
           PF04581: Protein of unknown function (DUF578)
          Length = 1011

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 306 VHHNVAASWSNETPSWPVLRPGA 374
           V H +  SWS  TPS+PV +PG+
Sbjct: 110 VGHTIDTSWS--TPSYPVPKPGS 130


>At3g28070.1 68416.m03503 nodulin MtN21 family protein similar to
           MtN21 [Medicago truncatula] GI:2598575
          Length = 360

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 19/60 (31%), Positives = 30/60 (50%)
 Frame = -3

Query: 525 MFSNFLAPGLGPLTADSALCSVSLIGFPATHCVITDTNNRHFTTPTLCRPARRGVGPAMT 346
           +F    +  L PL+  S L  + L+GF  +  VIT      +++PTL   A   + PA+T
Sbjct: 64  LFFTNRSSSLPPLSV-SILSKIGLLGFLGSMYVITGYIGIEYSSPTLA-SAINNITPALT 121


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,340,476
Number of Sequences: 28952
Number of extensions: 297265
Number of successful extensions: 879
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)