Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0048
         (699 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02990.1 68418.m00243 kelch repeat-containing F-box family pr...    29   3.9  
At1g24340.1 68414.m03070 monooxygenase family protein similar to...    28   5.2  

>At5g02990.1 68418.m00243 kelch repeat-containing F-box family
           protein contains Pfam profiles PF01344: Kelch motif,
           PF00646: F-box domain
          Length = 548

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 368 STGMCCNGSAVKIVGDFCCGTSKLSLII 451
           S+ +  NGS + IVG F CGTS   + +
Sbjct: 311 SSTVVANGSDIYIVGGFVCGTSSKRVFV 338


>At1g24340.1 68414.m03070 monooxygenase family protein similar to
           polyketide hydroxylases from several bacterial species;
           contains Pfam:PF01360 [Monooxygenase]
          Length = 707

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 296 YFRIRGLSEFVIGNSVYITFFIFNSTGM 379
           +F  R L E++I N   + FFIFN+ G+
Sbjct: 305 HFMSRELGEYLISNRPGMLFFIFNTDGI 332


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,658,703
Number of Sequences: 28952
Number of extensions: 195866
Number of successful extensions: 388
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)