Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0045
         (704 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q83HK3 Cluster: Putative uncharacterized protein; n=2; ...    37   0.42 
UniRef50_Q0SL68 Cluster: Putative uncharacterized protein; n=2; ...    35   2.2  
UniRef50_Q93EP1 Cluster: TccC2; n=3; Photorhabdus luminescens|Re...    33   9.0  
UniRef50_A5I2X7 Cluster: Putative membrane protein precursor; n=...    33   9.0  

>UniRef50_Q83HK3 Cluster: Putative uncharacterized protein; n=2;
           Tropheryma whipplei|Rep: Putative uncharacterized
           protein - Tropheryma whipplei (strain TW08/27)
           (Whipple's bacillus)
          Length = 165

 Score = 37.1 bits (82), Expect = 0.42
 Identities = 17/65 (26%), Positives = 34/65 (52%)
 Frame = +1

Query: 262 LTSKRSHLTFHSKILFQIKHHKIITELNYTNKTINMKRNRSYRLL*KPSSISTTPNNVSL 441
           +  KR  +T H+K +  ++++   T  N  N T +++   S  ++ KP+S+ +  N   +
Sbjct: 12  ILGKRLWITMHAKFIKHVQYNSYKTARNSVNNTDDIRGTDSLSVIDKPNSLLSVENLKKI 71

Query: 442 YYEYF 456
            Y YF
Sbjct: 72  TYAYF 76


>UniRef50_Q0SL68 Cluster: Putative uncharacterized protein; n=2;
           Borrelia afzelii PKo|Rep: Putative uncharacterized
           protein - Borrelia afzelii (strain PKo)
          Length = 215

 Score = 34.7 bits (76), Expect = 2.2
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
 Frame = +2

Query: 458 NTNKIHITRIQHSFKTSYNKSFYNSVT*-LSIYLP-YIVKQLLPYESRATRKMTPPDPTE 631
           N N + I R+     T++  + YN  +   SIYL  Y +K++L YE++    +     TE
Sbjct: 126 NYNALKI-RVNLKEITNFRNALYNGGSFKASIYLTAYPMKKILKYENKTLVVVKRETKTE 184

Query: 632 NTNSTFFYDTIEYFKC 679
           N +  + Y  I Y KC
Sbjct: 185 NDSCHYIYLDIPYIKC 200


>UniRef50_Q93EP1 Cluster: TccC2; n=3; Photorhabdus luminescens|Rep:
           TccC2 - Photorhabdus luminescens (Xenorhabdus
           luminescens)
          Length = 915

 Score = 32.7 bits (71), Expect = 9.0
 Identities = 28/75 (37%), Positives = 39/75 (52%)
 Frame = +1

Query: 274 RSHLTFHSKILFQIKHHKIITELNYTNKTINMKRNRSYRLL*KPSSISTTPNNVSLYYEY 453
           RS+   HS  L QI+H    T+ NYT   I +  NRS R +   S+++T PN V   ++ 
Sbjct: 391 RSYSYDHSGNLTQIRHSSPATQNNYT-VAITLS-NRSNRGV--LSTLTTDPNQVDTLFDA 446

Query: 454 FKH*QNTHYPHTTLI 498
             H Q +  P  TLI
Sbjct: 447 GGH-QTSLLPGQTLI 460


>UniRef50_A5I2X7 Cluster: Putative membrane protein precursor; n=4;
           Clostridium botulinum|Rep: Putative membrane protein
           precursor - Clostridium botulinum A str. ATCC 3502
          Length = 170

 Score = 32.7 bits (71), Expect = 9.0
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +1

Query: 223 YCTFILFLIFGR*LTSKRSHLTFHSKIL-FQIKHHKIITELNYTNKTINMKRNR 381
           +  FIL LI    +T   SH  F+  I  FQ K  + I + NY NK IN+K+++
Sbjct: 9   FIIFILILIMPFKITVIYSHKDFNIYIYNFQWKKGEDIKKQNYINKKINVKKDK 62


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 603,968,244
Number of Sequences: 1657284
Number of extensions: 11212424
Number of successful extensions: 25678
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 24747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25675
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56198352344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)