Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0045
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase Ubp11|Schizo...    26   4.6  
SPAC13D6.03c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual         26   6.0  
SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.0  
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    25   8.0  

>SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase
           Ubp11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +1

Query: 262 LTSKRSHLTFHSKILFQIKHHKIITELNYTNKTINMKRNRSYRL 393
           LT     ++F SK++ + KHH I+  L   + ++       YRL
Sbjct: 265 LTRNNVSISFPSKLILKNKHHYILRSLITHSGSVTYGHYLCYRL 308


>SPAC13D6.03c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 228

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +2

Query: 548 IYLPYIVKQLLPYESRATRKMTPPDPTENTNSTFFY 655
           +Y+P+I+K+   Y +    ++   DP EN     +Y
Sbjct: 157 VYVPWILKRQYEYPNAKPEELKGHDPAENIAYQRYY 192


>SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 269

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 322 HKIITELNYTNKTINMKRNRSYRLL*KPSSISTTP 426
           + I+  L +TN ++  K    + +   PSS ST+P
Sbjct: 167 YSILASLKHTNDSLQKKELSPHEIAESPSSHSTSP 201


>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +2

Query: 554 LPYIVKQLLP--YESRATRKMTPPDPTENTNSTFFYDTIEYFK 676
           L Y  ++ +P  Y+ R  + + P D   +T+  F  D I YFK
Sbjct: 819 LDYNYRKRIPMIYDLRTKKYIRPEDVRIDTDDVFKDDKIAYFK 861


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,671,979
Number of Sequences: 5004
Number of extensions: 51980
Number of successful extensions: 140
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)