Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0045
         (704 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51695| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_59567| Best HMM Match : Cyclin_N (HMM E-Value=3.3e-07)              28   8.5  
SB_15524| Best HMM Match : GDA1_CD39 (HMM E-Value=2.6e-05)             28   8.5  

>SB_51695| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
 Frame = +2

Query: 383 RIGCCKSLHQYQ-QHQTT*AFITNISNTNKIHITRIQHSFKTSYNKSFYNSVT*LSIYLP 559
           R G C + H     H     + T+       H T + H     Y+ S+Y   T  + +LP
Sbjct: 9   RAGTCTTHHTTPGPHPILPLYHTSYYPCTTRHTTHLPHVILPLYHTSYYPFTTRHTTHLP 68

Query: 560 YIVKQLLPYESRA 598
           +++ +L     RA
Sbjct: 69  HVIAELSAAAGRA 81


>SB_59567| Best HMM Match : Cyclin_N (HMM E-Value=3.3e-07)
          Length = 282

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -1

Query: 104 EISIIQEIDYQKLRLVYNNRRNSLKKH 24
           ++  + E++YQK+ + Y+N   SL +H
Sbjct: 28  DLQFLTEVEYQKVHIFYSNFMQSLGEH 54


>SB_15524| Best HMM Match : GDA1_CD39 (HMM E-Value=2.6e-05)
          Length = 405

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +2

Query: 524 YNSVT*LSIYLPYIVKQ----LLPYESRATRKMTPPDPTENTNSTFFYDTIEYFKC 679
           Y+  T + +++PY VKQ    + P       K    DPT++     F  +I   KC
Sbjct: 86  YHQTTPIYVFIPYTVKQTMKGMFPSSFYGPLKQFLDDPTQHPFLPTFSQSITVIKC 141


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,596,066
Number of Sequences: 59808
Number of extensions: 341304
Number of successful extensions: 811
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)