Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0045
         (704 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099913-2|AAC68749.1|  254|Caenorhabditis elegans Hypothetical ...    29   3.2  
AL117203-21|CAN86632.1|  171|Caenorhabditis elegans Hypothetical...    28   5.7  
AL117203-20|CAB55118.1|  244|Caenorhabditis elegans Hypothetical...    28   5.7  
Z77662-5|CAB01192.2|  579|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>AF099913-2|AAC68749.1|  254|Caenorhabditis elegans Hypothetical
           protein C29F9.8 protein.
          Length = 254

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/71 (23%), Positives = 33/71 (46%)
 Frame = +2

Query: 488 QHSFKTSYNKSFYNSVT*LSIYLPYIVKQLLPYESRATRKMTPPDPTENTNSTFFYDTIE 667
           ++S  TS     YN+   +  +LP++++Q L Y  R  R+ +     +N      Y+ ++
Sbjct: 73  EYSNHTSVVYVLYNTCDGVVKHLPFLLQQQLKY-VREVRRKSSASMGKNAEKNIVYNFLD 131

Query: 668 YFKCIKPPKAV 700
            F    P  A+
Sbjct: 132 IFTIFVPINAI 142


>AL117203-21|CAN86632.1|  171|Caenorhabditis elegans Hypothetical
           protein Y48C3A.18b protein.
          Length = 171

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 605 KMTPPDPTENTNSTFFYD 658
           K+ PPD T +  STFFYD
Sbjct: 141 KIQPPDVTNSVFSTFFYD 158


>AL117203-20|CAB55118.1|  244|Caenorhabditis elegans Hypothetical
           protein Y48C3A.18a protein.
          Length = 244

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 605 KMTPPDPTENTNSTFFYD 658
           K+ PPD T +  STFFYD
Sbjct: 214 KIQPPDVTNSVFSTFFYD 231


>Z77662-5|CAB01192.2|  579|Caenorhabditis elegans Hypothetical
           protein F47B8.5 protein.
          Length = 579

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +1

Query: 226 CTFILFLIFGR*LTSKRSHLTFHSKILFQIKHHKIITELNYTNKTINMKRNRS 384
           C F LF  F   +T   SH  FH+KI F ++   +  +    N  I+   + S
Sbjct: 314 CLFSLFSFFNF-ITFSTSHFHFHNKIKFLLEGETVYKQKIIENGIISPSNSSS 365


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,392,698
Number of Sequences: 27780
Number of extensions: 278506
Number of successful extensions: 638
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)