Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0044
         (475 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    22   2.5  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    21   5.8  

>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +2

Query: 248 VLYGKTFLPQYFSYFSNCNFRNILKTNVVYLFLI 349
           ++Y    L  + +YF     + +LKTN    F+I
Sbjct: 293 IVYVSLLLGPHPTYFGKTGRKTVLKTNKYCNFII 326



 Score = 21.8 bits (44), Expect = 3.3
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 178 YINKTTGYFLCPKCNLHGDWTILERI 101
           YIN  T Y++C    + G   I+  I
Sbjct: 128 YINYETDYYVCLAMTITGPLVIIGNI 153


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 105 LSNIVQSPCKLHFGHKK*PVVLLI*TLLSSQFCS 206
           L+++ + P KLHF  K   V+    T     FC+
Sbjct: 43  LNHLNEEPEKLHFTFKSWKVLYTSLTSFGYLFCA 76


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,719
Number of Sequences: 336
Number of extensions: 2213
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11036865
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)