Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0044
(475 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 32 0.051
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 26 2.5
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 26 2.5
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 26 3.4
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 25 5.9
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 25 5.9
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 25 7.8
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 7.8
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats... 25 7.8
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom... 25 7.8
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 31.9 bits (69), Expect = 0.051
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -1
Query: 181 VYINKTTGYFLCPKCNLHGDWTI 113
V NK YF+CP CN DW +
Sbjct: 8 VLFNKIRSYFICPGCNCLPDWPV 30
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 26.2 bits (55), Expect = 2.5
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = -1
Query: 463 LAHNVKTAITNFEMLHSIRINRYINSFKSITSRNDWNCYQKQIHNIGLQDIPKIT 299
LA ++ A N ++ I NR+I I+S+N N Y + LQD PKI+
Sbjct: 326 LADSLCYASDNAFVVKEILSNRHILMRDLISSKNQTNSYLSAANR--LQDSPKIS 378
>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 26.2 bits (55), Expect = 2.5
Identities = 9/34 (26%), Positives = 22/34 (64%)
Frame = -1
Query: 118 TILERIVKKAKVEVSIKDYIDKLQNDTASFKNEW 17
+I++ + + + +S++ + K++N S+KNEW
Sbjct: 77 SIIKELSELSSQTLSVQSQLLKVKNSIDSYKNEW 110
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 25.8 bits (54), Expect = 3.4
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -2
Query: 300 QLLKYEKYCGRKVLPYKTDSRL*LQNVRYAQQNRIART 187
+L K K C R + PY+ DS + RY + ++T
Sbjct: 366 KLKKMRKLCSRSLEPYELDSNTQRKRKRYEDSLKKSKT 403
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 25.0 bits (52), Expect = 5.9
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 133 LHGDWTILERIVKKAKVEVSIKDYIDKLQNDTASFKN 23
L D T E + A + ++K+ +DKL N ++ FKN
Sbjct: 846 LTADHTNYETV--SADINQNLKETLDKLLNGSSDFKN 880
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 25.0 bits (52), Expect = 5.9
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -1
Query: 151 LCPKCN-LHGDWTILERIVKKAKVEVSIKDYIDKLQNDTASFKNEWENVI 5
LC N + GD T E+ ++K +E + ++D Q ++ N W+ V+
Sbjct: 425 LCVTINDILGDETSSEQCIQK--LEAAFARFVDNQQIYPLTYDNTWKGVV 472
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 24.6 bits (51), Expect = 7.8
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = -1
Query: 364 NDWNCYQKQIHNIGLQDIPKITVTEIRKVLRQKGF 260
NDW +++H+ G+ I +TV + ++ +GF
Sbjct: 155 NDWRGTIEEMHSKGMYVIVDLTVATLADLIGFEGF 189
>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 689
Score = 24.6 bits (51), Expect = 7.8
Identities = 10/36 (27%), Positives = 17/36 (47%)
Frame = -3
Query: 161 RLFLMPKMQLAWRLDNIGKNSQKGQSRSFN*RLHRQ 54
RL + P L W + ++GK G++ H+Q
Sbjct: 557 RLLINPIRMLCWHITDVGKTLDLGEAEKLLKYNHKQ 592
>SPAC4G9.20c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 24.6 bits (51), Expect = 7.8
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = -1
Query: 412 IRINRYINSFKSITSRNDWNCYQKQIHNIGLQDIPK 305
+RI I + K++ W+C +K GL I K
Sbjct: 136 VRIRLQIQTGKNVLYHGPWDCIKKISSQYGLSGIMK 171
>SPBC2F12.13 |klp5|sot1|kinesin-like protein
Klp5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 883
Score = 24.6 bits (51), Expect = 7.8
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -2
Query: 303 LQLLKYEKYCGRKVLPYKTDSRL*LQNVRYAQQNRIARTARFI 175
+++LKY C ++LP D R+ L VR ++ + R A I
Sbjct: 488 IRVLKYWLSCYERILPNSADERVFL--VRSKLESLLTRRAEII 528
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,852,035
Number of Sequences: 5004
Number of extensions: 34711
Number of successful extensions: 94
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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