Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0044
         (475 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_02_0051 + 7776312-7780228,7780627-7780695,7781920-7781979,778...    27   5.8  
08_02_0859 + 21960172-21961121,21961244-21961304,21961406-21962527     27   5.8  
06_03_0651 - 23164377-23165969                                         27   7.7  

>11_02_0051 +
           7776312-7780228,7780627-7780695,7781920-7781979,
           7782225-7782324,7782720-7782801,7782928-7782940,
           7783621-7783681
          Length = 1433

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
 Frame = +2

Query: 215 YRTFCSYRRESVL----YGKTFLPQYFSYFSNCNFRNILKTNV 331
           +  FC+ ++  VL    Y    LPQ    F +  + NILKT++
Sbjct: 583 HEVFCNMKKLRVLLLCFYNSRKLPQSIDEFKHLRYLNILKTSI 625


>08_02_0859 + 21960172-21961121,21961244-21961304,21961406-21962527
          Length = 710

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 21/66 (31%), Positives = 28/66 (42%)
 Frame = +2

Query: 143 WA*EITCGFVNINLAVLAILFC*AYRTFCSYRRESVLYGKTFLPQYFSYFSNCNFRNILK 322
           W  E+ C F N  L     +FC         R ES+   +TFL      FS  +   +L+
Sbjct: 210 WIEELGC-FGNDGLLTAIDVFCLDLELMSWERVESIGSDRTFLISENYTFSCPSIEGVLQ 268

Query: 323 TNVVYL 340
            N VYL
Sbjct: 269 GNCVYL 274


>06_03_0651 - 23164377-23165969
          Length = 530

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = -1

Query: 151 LCPKCNLHGDWTILERIVKKAKVEVSIKDYIDKLQNDTASFKNEWENVIK 2
           L   C  HG+  + ER+ K+   + S    ++ L ++  +  + WE+VI+
Sbjct: 457 LLTACKAHGNVEMSERLTKRICEQDSQITDVNLLMSNVYATASRWEDVIR 506


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,537,404
Number of Sequences: 37544
Number of extensions: 178529
Number of successful extensions: 463
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)