Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0044
(475 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28625| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.49
SB_26788| Best HMM Match : zf-UBR1 (HMM E-Value=6.7) 31 0.49
SB_57117| Best HMM Match : Peptidase_C48 (HMM E-Value=8.4e-05) 31 0.49
SB_42932| Best HMM Match : zf-UBR1 (HMM E-Value=7.1) 31 0.49
SB_41307| Best HMM Match : zf-UBR1 (HMM E-Value=6.7) 31 0.49
SB_28011| Best HMM Match : PSCyt1 (HMM E-Value=5.6) 31 0.65
SB_49598| Best HMM Match : Wound_ind (HMM E-Value=1.8) 30 0.85
SB_36079| Best HMM Match : Peptidase_C48 (HMM E-Value=0.097) 30 0.85
SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_17500| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.0
SB_28402| Best HMM Match : ResIII (HMM E-Value=0.061) 27 6.0
SB_26701| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.0
SB_30923| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_15403| Best HMM Match : CH (HMM E-Value=0) 27 7.9
SB_3321| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
>SB_28625| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 836
Score = 31.1 bits (67), Expect = 0.49
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = -1
Query: 175 INKTTGYFLCPKCNLHGDWTILERIVKKAKVEVSIKDYIDKLQNDTASFKNEWE 14
++KT LC D +ER K VE S+ D D+ D + +WE
Sbjct: 244 VSKTADEMLCKTVCSTNDAKCMERDCSKCDVEGSVNDMFDECNEDQSVSYYQWE 297
>SB_26788| Best HMM Match : zf-UBR1 (HMM E-Value=6.7)
Length = 335
Score = 31.1 bits (67), Expect = 0.49
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = -1
Query: 175 INKTTGYFLCPKCNLHGDWTILERIVKKAKVEVSIKDYIDKLQNDTASFKNEWE 14
++KT LC D +ER K VE S+ D D+ D + +WE
Sbjct: 144 VSKTADEMLCKTVCSTNDAKCMERDCSKCDVEGSVNDMFDECDEDQSVSYYQWE 197
>SB_57117| Best HMM Match : Peptidase_C48 (HMM E-Value=8.4e-05)
Length = 524
Score = 31.1 bits (67), Expect = 0.49
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = -1
Query: 175 INKTTGYFLCPKCNLHGDWTILERIVKKAKVEVSIKDYIDKLQNDTASFKNEWE 14
++KT LC D +ER K VE S+ D D+ D + +WE
Sbjct: 250 VSKTADEMLCKTVCSTNDAKCMERDCSKCDVEGSVNDMFDECNEDQSVSYYQWE 303
>SB_42932| Best HMM Match : zf-UBR1 (HMM E-Value=7.1)
Length = 271
Score = 31.1 bits (67), Expect = 0.49
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = -1
Query: 175 INKTTGYFLCPKCNLHGDWTILERIVKKAKVEVSIKDYIDKLQNDTASFKNEWE 14
++KT LC D +ER K VE S+ D D+ D + +WE
Sbjct: 28 VSKTADEMLCKTVCSTNDAKCMERDCSKCDVEGSVNDMFDECNEDQSVSYYQWE 81
>SB_41307| Best HMM Match : zf-UBR1 (HMM E-Value=6.7)
Length = 243
Score = 31.1 bits (67), Expect = 0.49
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = -1
Query: 175 INKTTGYFLCPKCNLHGDWTILERIVKKAKVEVSIKDYIDKLQNDTASFKNEWE 14
++KT LC D +ER K VE S+ D D+ D + +WE
Sbjct: 109 VSKTADEMLCKTVCSTNDAKCMERDCSKCDVEGSVNDIFDECNEDQSVSYYQWE 162
>SB_28011| Best HMM Match : PSCyt1 (HMM E-Value=5.6)
Length = 491
Score = 30.7 bits (66), Expect = 0.65
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 193 EDSKVYINKTTGYFLCPKCNLHGDWTILE 107
++ ++INKTTG C C G W L+
Sbjct: 119 QELSLFINKTTGSHFCRNCGASGSWRQLK 147
>SB_49598| Best HMM Match : Wound_ind (HMM E-Value=1.8)
Length = 373
Score = 30.3 bits (65), Expect = 0.85
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = -1
Query: 175 INKTTGYFLCPKCNLHGDWTILERIVKKAKVEVSIKDYIDKLQNDTASFKNEWE 14
++KT LC D +ER K VE S+ D D+ D + +WE
Sbjct: 261 VSKTADEMLCKTVCSTNDAKCMERDCSKCDVEGSVNDMFDECNADQSVSYYQWE 314
>SB_36079| Best HMM Match : Peptidase_C48 (HMM E-Value=0.097)
Length = 796
Score = 30.3 bits (65), Expect = 0.85
Identities = 16/54 (29%), Positives = 22/54 (40%)
Frame = -1
Query: 175 INKTTGYFLCPKCNLHGDWTILERIVKKAKVEVSIKDYIDKLQNDTASFKNEWE 14
++KT LC D +ER K VE S+ D D+ D +WE
Sbjct: 144 VSKTADEMLCKTVCSTNDAKCMERDCSKCDVEGSVNDMFDECNEDQLVSYYQWE 197
>SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1743
Score = 27.9 bits (59), Expect = 4.5
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = +2
Query: 224 FCSYRRESVL---YGKTFLPQYFSYFSNCNFRNILKTNV 331
F +R S+L Y + +LP + S FS C F +LK +
Sbjct: 1135 FLCFRNTSILRSSYKRPYLPIHVSGFSRCLFEFVLKEQI 1173
>SB_17500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 366
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = -1
Query: 469 FLLAHNVKTAITNFEMLHSIRINRYINSFKSITSRNDWNCYQKQIHNIGLQDIPKI 302
FLLAH+ + N++ML I + F+ I + K++ ++D KI
Sbjct: 18 FLLAHDDENMSPNYDMLELIGEGSFAKVFRCIERKTGLEFAAKELRLTDVEDKEKI 73
>SB_28402| Best HMM Match : ResIII (HMM E-Value=0.061)
Length = 337
Score = 27.5 bits (58), Expect = 6.0
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = -1
Query: 394 INSFKSITSRNDWNCYQKQIHNIGLQDIPKITVTEIRKVLRQKGFAVQDG 245
I S K I+ R + K N GL+ KI T+I V + GF V G
Sbjct: 114 IESIKKISQRGNEEGESKDGDNRGLEKDLKIEDTDINGVRQASGFTVIGG 163
>SB_26701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 409
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -1
Query: 115 ILERIVKKAKVEVSIK-DYIDKLQNDTASFKNEWEN 11
++ER + + E K D+I+ +ND SF NEW +
Sbjct: 258 VVERSLNRRTNEEERKQDFINMDENDAPSFDNEWNH 293
>SB_30923| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 27.1 bits (57), Expect = 7.9
Identities = 9/20 (45%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = -1
Query: 196 CEDSKVYINKTTGYF-LCPK 140
C+D +Y++ GYF +CPK
Sbjct: 6 CQDGGIYVSMAHGYFCICPK 25
>SB_15403| Best HMM Match : CH (HMM E-Value=0)
Length = 1907
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -1
Query: 193 EDSKVYINKTTGYFLCPKCNLHGDWTILERIVKKAKVEV 77
+ S +Y G LC NL TI ER++ K ++V
Sbjct: 75 DSSDLYEKVKDGILLCKMINLSAPGTIDERVINKPPLKV 113
>SB_3321| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 286
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = -1
Query: 472 FFLLAHNVKTAITNFEMLHSIRINRYINSFKSITSRNDWN 353
FF++ V + N +I + N FK + S DWN
Sbjct: 142 FFIVCFQVSLFMVNSTCEPAISTLTHTNKFKRLDSEEDWN 181
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,249,174
Number of Sequences: 59808
Number of extensions: 242008
Number of successful extensions: 630
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 994359969
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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