Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0040
(675 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49967-1|CAA90247.1| 161|Caenorhabditis elegans Hypothetical pr... 198 2e-51
Z27079-13|CAA81597.2| 195|Caenorhabditis elegans Hypothetical p... 190 8e-49
CU457743-2|CAM36365.1| 695|Caenorhabditis elegans Hypothetical ... 31 0.75
AY204179-1|AAO39183.1| 486|Caenorhabditis elegans nuclear recep... 30 1.3
AF332209-1|AAK17980.1| 350|Caenorhabditis elegans nuclear recep... 30 1.3
AF078783-3|AAN63404.1| 504|Caenorhabditis elegans Nuclear hormo... 30 1.3
AF078783-2|AAK82901.1| 486|Caenorhabditis elegans Nuclear hormo... 30 1.3
AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical... 29 2.3
Z74031-2|CAA98454.2| 568|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z70310-6|CAE17904.1| 293|Caenorhabditis elegans Hypothetical pr... 28 7.0
U40958-5|AAA81764.1| 654|Caenorhabditis elegans Hypothetical pr... 28 7.0
U88178-1|AAC24412.1| 296|Caenorhabditis elegans Hypothetical pr... 27 9.2
U80445-11|AAB37801.2| 479|Caenorhabditis elegans Hypothetical p... 27 9.2
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr... 27 9.2
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int... 27 9.2
>Z49967-1|CAA90247.1| 161|Caenorhabditis elegans Hypothetical
protein F54C9.1 protein.
Length = 161
Score = 198 bits (484), Expect = 2e-51
Identities = 95/154 (61%), Positives = 118/154 (76%), Gaps = 2/154 (1%)
Frame = +2
Query: 65 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 244
+D HF TGDSGA+ATFP QCSALRKN VM+KGRPCKIVEMSTSKTGKHGHAKVH+V ID
Sbjct: 7 DDEHFHTGDSGAAATFPKQCSALRKNEHVMIKGRPCKIVEMSTSKTGKHGHAKVHMVAID 66
Query: 245 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDLKIPDGDLG 421
IF KK EDICPSTHNMDVP VKR +Y L I DDGY +LM ++ + ++DLK+PD +LG
Sbjct: 67 IFTSKKLEDICPSTHNMDVPVVKRREYLLMAI-DDGYCSLMDPESCEQKDDLKLPDTELG 125
Query: 422 TQLRTDFDSGK-ELLCTVLKSCGEECVIAVKANT 520
Q+R ++ + +L V+ + GEE ++ K +T
Sbjct: 126 QQIRDAYEKDEGSVLVQVVSAIGEEAILGWKVST 159
>Z27079-13|CAA81597.2| 195|Caenorhabditis elegans Hypothetical
protein T05G5.10 protein.
Length = 195
Score = 190 bits (463), Expect = 8e-49
Identities = 89/154 (57%), Positives = 118/154 (76%), Gaps = 2/154 (1%)
Frame = +2
Query: 65 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 244
++ F++ +SGA+ATFP QCSALRKN VM++GRPCKIVEMSTSKTGKHGHAKVH+V ID
Sbjct: 41 DEEQFDSAESGAAATFPKQCSALRKNEHVMIRGRPCKIVEMSTSKTGKHGHAKVHMVAID 100
Query: 245 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDLKIPDGDLG 421
IF KK EDICPSTHNMDVP VKR +Y L I +DG+ +LM ++ +L++DLK+P+GDLG
Sbjct: 101 IFTTKKLEDICPSTHNMDVPVVKRREYILMSI-EDGFCSLMDPESCELKDDLKMPEGDLG 159
Query: 422 TQLRTDFDSGK-ELLCTVLKSCGEECVIAVKANT 520
+R + + +L V+ +CGEE ++ K +T
Sbjct: 160 NTIREALEKDEGSVLVQVVAACGEEAILGYKIST 193
>CU457743-2|CAM36365.1| 695|Caenorhabditis elegans Hypothetical
protein K09E10.2 protein.
Length = 695
Score = 31.1 bits (67), Expect = 0.75
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Frame = +2
Query: 290 NMDVPHVKREDYQLTDI--SDDGYLTLMADNGDLREDLKIPDGDLGTQLRTD-FDSGKEL 460
N +P +K++ Y L ++ GY+ + GDL+ KI D LR D ++ G+
Sbjct: 573 NKFIPFIKKKLYILDSFPRANSGYIARVP--GDLKNGKKIEDISKA-MLRPDGYERGRLR 629
Query: 461 LCTVLKSCGEEC 496
++K CG++C
Sbjct: 630 HAALVKECGDKC 641
>AY204179-1|AAO39183.1| 486|Caenorhabditis elegans nuclear receptor
NHR-80 protein.
Length = 486
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Frame = +3
Query: 30 VVKFKTQQWVTSKTH-----TSRPETPGPQPPSPCNVRPCVKTV 146
V+K T + ++S T T+ TPGP P +PC+ P V T+
Sbjct: 149 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDVLTL 192
>AF332209-1|AAK17980.1| 350|Caenorhabditis elegans nuclear receptor
NHR-80 protein.
Length = 350
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Frame = +3
Query: 30 VVKFKTQQWVTSKTH-----TSRPETPGPQPPSPCNVRPCVKTV 146
V+K T + ++S T T+ TPGP P +PC+ P V T+
Sbjct: 13 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDVLTL 56
>AF078783-3|AAN63404.1| 504|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 80, isoform b protein.
Length = 504
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Frame = +3
Query: 30 VVKFKTQQWVTSKTH-----TSRPETPGPQPPSPCNVRPCVKTV 146
V+K T + ++S T T+ TPGP P +PC+ P V T+
Sbjct: 167 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDVLTL 210
>AF078783-2|AAK82901.1| 486|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 80, isoform a protein.
Length = 486
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Frame = +3
Query: 30 VVKFKTQQWVTSKTH-----TSRPETPGPQPPSPCNVRPCVKTV 146
V+K T + ++S T T+ TPGP P +PC+ P V T+
Sbjct: 149 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDVLTL 192
>AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical
protein F59E12.1 protein.
Length = 811
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +3
Query: 60 TSKTHTSRPETPGPQPPSPCNVRP 131
T K T R E+P P PP P RP
Sbjct: 358 TEKPETPRAESPDPLPPPPSKKRP 381
>Z74031-2|CAA98454.2| 568|Caenorhabditis elegans Hypothetical
protein F32D8.2 protein.
Length = 568
Score = 28.7 bits (61), Expect = 4.0
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Frame = +2
Query: 245 IFNGKKYEDICPSTHNMDVPHVKREDYQLT------DISDDGYLTLMADN-GDLREDLK 400
IF + ED+ T + H+ R + ++ D+S DGYLTL + N DL D++
Sbjct: 74 IFFPNEDEDVFGLTPDKSKQHIVRGECKINELNEKVDLSSDGYLTLRSKNTNDLPSDIR 132
>Z70310-6|CAE17904.1| 293|Caenorhabditis elegans Hypothetical
protein R11A8.8 protein.
Length = 293
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 350 GYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLC 466
GYL GD ++++K+ +G Q+ +D D K C
Sbjct: 251 GYLPQQPKKGDKKKNIKLKEGRTEHQIVSDIDPAKLRAC 289
>U40958-5|AAA81764.1| 654|Caenorhabditis elegans Hypothetical
protein F09F9.4 protein.
Length = 654
Score = 27.9 bits (59), Expect = 7.0
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -1
Query: 147 KPFLRRAEHCMGKVAEAPESPVSKCVSSMSP 55
+P +R+++C G + E E ++KC +M P
Sbjct: 345 EPVPKRSKYCDGPLIETQECTLTKCPEAMMP 375
>U88178-1|AAC24412.1| 296|Caenorhabditis elegans Hypothetical
protein W09C3.4 protein.
Length = 296
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -1
Query: 513 ALTAMTHSSPQDFSTVHNNSLPLSKSVRNCVPRSPSGILR 394
ALT+MT PQ NSL SK + + ++P G+LR
Sbjct: 33 ALTSMTPGLPQTVRQTAINSLLSSKKL--AIQQAPGGVLR 70
>U80445-11|AAB37801.2| 479|Caenorhabditis elegans Hypothetical
protein C50F2.8 protein.
Length = 479
Score = 27.5 bits (58), Expect = 9.2
Identities = 23/78 (29%), Positives = 36/78 (46%)
Frame = -3
Query: 412 TIRDFEVLTQVTVVSHQGQVAIIRDISQLVVFALHVGYVHVVCGGTDIFILFTIEDINPN 233
T D LTQV V H GQ+ ++ I++ + L G V G D++ IE++
Sbjct: 137 TTVDAGQLTQVEVEKHGGQL-VVTKINEKSNYDLKPGDVITQVDGKDVYFRADIENLK-G 194
Query: 232 QVNFSVAVLSGFGCGHFN 179
+V +V +G C N
Sbjct: 195 KVELTVEP-AGIHCAPAN 211
>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical protein
F57F4.4 protein.
Length = 2090
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Frame = +3
Query: 372 TTVTCVRTSKSRMVTSAHSCVLTSTAARNCCAP---C*NPAVRSASSPSK 512
T +TC T+ + + ++SC CC C NP + P+K
Sbjct: 1822 TLLTCDPTTVCQQLNMSNSCQTVEPGVSGCCCDTDGCLNPLTNTYPGPAK 1871
>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
interacting proteinprotein 1 protein.
Length = 2153
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Frame = +3
Query: 372 TTVTCVRTSKSRMVTSAHSCVLTSTAARNCCAP---C*NPAVRSASSPSK 512
T +TC T+ + + ++SC CC C NP + P+K
Sbjct: 1822 TLLTCDPTTVCQQLNMSNSCQTVEPGVSGCCCDTDGCLNPLTNTYPGPAK 1871
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,097,406
Number of Sequences: 27780
Number of extensions: 357102
Number of successful extensions: 1144
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1121
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -