Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0039
(692 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110485-14|CAB60362.1| 109|Caenorhabditis elegans Hypothetical... 30 1.8
Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z75952-5|CAB00093.2| 149|Caenorhabditis elegans Hypothetical pr... 29 3.2
AC006644-5|AAF39834.1| 786|Caenorhabditis elegans Hypothetical ... 29 4.2
Z82080-4|CAC70117.1| 1125|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z81529-3|CAB04300.1| 224|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z81529-1|CAB04294.1| 224|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z75552-8|CAD54158.1| 939|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z75552-7|CAA99943.3| 944|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z75539-5|CAD54134.1| 939|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z75539-4|CAA99846.3| 944|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z75714-2|CAB00059.1| 474|Caenorhabditis elegans Hypothetical pr... 28 7.3
AF016687-5|AAC48093.1| 709|Caenorhabditis elegans Hypothetical ... 28 7.3
AL132860-29|CAB60505.2| 386|Caenorhabditis elegans Hypothetical... 27 9.6
AC199171-1|ABO33269.1| 121|Caenorhabditis elegans Hypothetical ... 27 9.6
AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical ... 27 9.6
>AL110485-14|CAB60362.1| 109|Caenorhabditis elegans Hypothetical
protein Y46G5A.20 protein.
Length = 109
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = -1
Query: 134 DGFSYHSRSRDSVAVSQGSSSEETTSADYAYSAQSNDQLG 15
D F H+ R S + S SSS T+S+ + S++S+DQ+G
Sbjct: 28 DSFPRHAPRRRSSS-SSSSSSSSTSSSSSSNSSESDDQVG 66
>Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical
protein R13H4.8 protein.
Length = 212
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/42 (38%), Positives = 17/42 (40%)
Frame = +2
Query: 431 CSRCSSHRRILRPRYTRSCDVLRACCC*GDRSRCSLRCTCGC 556
C RC + R TR C R CCC C C CGC
Sbjct: 97 CRRCCTCCRTCC--CTRCCTCCRPCCC-----GCGCGCGCGC 131
>Z75952-5|CAB00093.2| 149|Caenorhabditis elegans Hypothetical
protein F29D10.2 protein.
Length = 149
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +2
Query: 476 TRSCDVLRACCC*GDRSRCSLRCTCGC 556
TR C R CCC C C CGC
Sbjct: 92 TRCCTCCRPCCC-----GCGCGCGCGC 113
>AC006644-5|AAF39834.1| 786|Caenorhabditis elegans Hypothetical
protein F55A3.2 protein.
Length = 786
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +2
Query: 281 YWPSIFVRRCTIVRLCRISGCDQDHFSSCFLSIFLLVHNRSWITIFR 421
YW SIF+R C I LC+ + +S F H + IT F+
Sbjct: 589 YWLSIFLRSCGIDWLCKSNNICSAAWSLVFRDSNKTSHQQYAITYFK 635
>Z82080-4|CAC70117.1| 1125|Caenorhabditis elegans Hypothetical
protein W09G3.6 protein.
Length = 1125
Score = 28.3 bits (60), Expect = 5.5
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -3
Query: 279 HMSMLVQQHKRRQEQQWS**RLEQHRRQRCGH 184
+M M+ ++ +R+Q++ W RL QH ++ H
Sbjct: 685 NMGMISEEMRRKQDEMWLDLRLTQHIKKHSSH 716
>Z81529-3|CAB04300.1| 224|Caenorhabditis elegans Hypothetical
protein F35E8.4 protein.
Length = 224
Score = 28.3 bits (60), Expect = 5.5
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Frame = +2
Query: 284 WPSIFVRRC-TIVRLCRISGCDQDHFSSCF--LSIFLLVHNRSWITIFRNILCSRCSSHR 454
W ++ + C + C GC D + C LSI L V + ++ + C RCS+
Sbjct: 115 WRTVIAQDCPSACGFCNEGGC-VDAITDCGDDLSICLNVKMQDFVNQYCQKTCKRCSAAT 173
Query: 455 RILRPRYTRSCDV 493
+ P T +C V
Sbjct: 174 TV-APPVTNNCTV 185
>Z81529-1|CAB04294.1| 224|Caenorhabditis elegans Hypothetical
protein F35E8.1 protein.
Length = 224
Score = 28.3 bits (60), Expect = 5.5
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Frame = +2
Query: 284 WPSIFVRRC-TIVRLCRISGCDQDHFSSCF--LSIFLLVHNRSWITIFRNILCSRCSSHR 454
W ++ + C + C GC D + C LSI L V + ++ + C RCS+
Sbjct: 115 WRTVIAQDCPSACGFCNEGGC-VDAITDCGDDLSICLNVKMQDFVNQYCQKTCKRCSAAT 173
Query: 455 RILRPRYTRSCDV 493
+ P T +C V
Sbjct: 174 TV-APPVTNNCTV 185
>Z75552-8|CAD54158.1| 939|Caenorhabditis elegans Hypothetical
protein F28C1.3b protein.
Length = 939
Score = 28.3 bits (60), Expect = 5.5
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Frame = +2
Query: 326 CRIS-GCDQDHFSSCF---LSIFLLVHNRSWITIFRNILCSRCSSHRRILRPRYTRSCDV 493
C IS G + + SC LS + R W TIFR+I R + ++L RYT D
Sbjct: 190 CAISLGEMIEFYDSCVRLNLSFNKQIDMRGWTTIFRSI---RHAVSLQMLNLRYTNLNDR 246
Query: 494 LRACCC*GDRSRCSLRCTCGCLQDHQSCSIFCVILL 601
C R++ S TC L++ Q ++L+
Sbjct: 247 SIPALCKMARAQPSASLTCLHLENTQMSGKNLLVLI 282
>Z75552-7|CAA99943.3| 944|Caenorhabditis elegans Hypothetical
protein F28C1.3a protein.
Length = 944
Score = 28.3 bits (60), Expect = 5.5
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Frame = +2
Query: 326 CRIS-GCDQDHFSSCF---LSIFLLVHNRSWITIFRNILCSRCSSHRRILRPRYTRSCDV 493
C IS G + + SC LS + R W TIFR+I R + ++L RYT D
Sbjct: 190 CAISLGEMIEFYDSCVRLNLSFNKQIDMRGWTTIFRSI---RHAVSLQMLNLRYTNLNDR 246
Query: 494 LRACCC*GDRSRCSLRCTCGCLQDHQSCSIFCVILL 601
C R++ S TC L++ Q ++L+
Sbjct: 247 SIPALCKMARAQPSASLTCLHLENTQMSGKNLLVLI 282
>Z75539-5|CAD54134.1| 939|Caenorhabditis elegans Hypothetical
protein F28C1.3b protein.
Length = 939
Score = 28.3 bits (60), Expect = 5.5
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Frame = +2
Query: 326 CRIS-GCDQDHFSSCF---LSIFLLVHNRSWITIFRNILCSRCSSHRRILRPRYTRSCDV 493
C IS G + + SC LS + R W TIFR+I R + ++L RYT D
Sbjct: 190 CAISLGEMIEFYDSCVRLNLSFNKQIDMRGWTTIFRSI---RHAVSLQMLNLRYTNLNDR 246
Query: 494 LRACCC*GDRSRCSLRCTCGCLQDHQSCSIFCVILL 601
C R++ S TC L++ Q ++L+
Sbjct: 247 SIPALCKMARAQPSASLTCLHLENTQMSGKNLLVLI 282
>Z75539-4|CAA99846.3| 944|Caenorhabditis elegans Hypothetical
protein F28C1.3a protein.
Length = 944
Score = 28.3 bits (60), Expect = 5.5
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Frame = +2
Query: 326 CRIS-GCDQDHFSSCF---LSIFLLVHNRSWITIFRNILCSRCSSHRRILRPRYTRSCDV 493
C IS G + + SC LS + R W TIFR+I R + ++L RYT D
Sbjct: 190 CAISLGEMIEFYDSCVRLNLSFNKQIDMRGWTTIFRSI---RHAVSLQMLNLRYTNLNDR 246
Query: 494 LRACCC*GDRSRCSLRCTCGCLQDHQSCSIFCVILL 601
C R++ S TC L++ Q ++L+
Sbjct: 247 SIPALCKMARAQPSASLTCLHLENTQMSGKNLLVLI 282
>Z75714-2|CAB00059.1| 474|Caenorhabditis elegans Hypothetical
protein ZC434.3 protein.
Length = 474
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +1
Query: 601 PLPQPMVVLTEDFTLPPLYLPMP 669
P P P ED+ LPP Y P P
Sbjct: 35 PNPAPFKPRQEDYNLPPFYQPNP 57
>AF016687-5|AAC48093.1| 709|Caenorhabditis elegans Hypothetical
protein T21D12.11 protein.
Length = 709
Score = 27.9 bits (59), Expect = 7.3
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -3
Query: 216 LEQHRRQRCGHRERCELSKKRP 151
+E HRR+RC ++RC + + P
Sbjct: 320 VECHRRRRCSRKQRCHTTTQPP 341
>AL132860-29|CAB60505.2| 386|Caenorhabditis elegans Hypothetical
protein Y56A3A.28 protein.
Length = 386
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 398 RSWITIFRNILCSRCSSHRRILRPRYTRSCDVL 496
RSW +I R+ LC C + R R Y + D L
Sbjct: 10 RSWTSISRHFLCLECRKYFRNKREFYWHTEDCL 42
>AC199171-1|ABO33269.1| 121|Caenorhabditis elegans Hypothetical
protein VY35H6BL.2 protein.
Length = 121
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 536 LRCTCGCLQDHQSCSIFCVILLLYHSPWWFLRRTLRC 646
L C+ C + + + + LL SP W +R+TLRC
Sbjct: 14 LPCSNLCSKAFELTDLCPEVELLKLSPSWLIRKTLRC 50
>AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical
protein Y108G3AL.7 protein.
Length = 1192
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -3
Query: 498 RSTSQLRV*RGRS-MRRWLEHREQSMLRKMVIHERLWTSKKILR 370
R+ LR R R + WLE E+ +R +VIHE +++IL+
Sbjct: 459 RTEKLLRSQRRRDWVGSWLEGLEREKIRFVVIHESYTQARRILK 502
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,274,642
Number of Sequences: 27780
Number of extensions: 219420
Number of successful extensions: 891
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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