Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0038
         (427 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    25   3.7  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   4.9  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    25   6.5  
SPAC1952.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       24   8.6  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    24   8.6  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    24   8.6  

>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 105 LSTXEGITSCSKNQTRKIIISVITG 179
           +ST    TS S N+  K+IIS ITG
Sbjct: 275 ISTIHHCTSDSFNELEKLIISKITG 299


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 388 AHSPPGVKWLLEPIDIYNVNAPHTLR 311
           A  PP +K    P+DI N++A   L+
Sbjct: 224 ASQPPSIKTDASPVDIKNMDAAEKLK 249


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = -3

Query: 212 TYPCGLTRGPTTSNYGNYNFAGLIFTARCYSFTRGKSIVNIC 87
           +YP   T   T +    +NF   +F+   +S     S+ N+C
Sbjct: 394 SYPASFTYVVTAAERSYFNFIPSLFSKSVFSHMITSSLNNLC 435


>SPAC1952.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 158

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 164 NYNFAGLIFTARCYSFTRGKSIVN 93
           +YNF  +  TA    F RG+ ++N
Sbjct: 121 SYNFLSMFGTAFLNGFRRGRKLIN 144


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -1

Query: 298 GLSIVTTAAPPFKPKPHYCFTAEIGGAVVPTRADSQEVL 182
           GLS+ TT  P FK         ++  +V    ADS + L
Sbjct: 110 GLSVTTTGLPKFKNIVDCTGAGDVDTSVEVAAADSNDYL 148


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 394 GRAHSPPGVKWLLEPIDIYN 335
           G  H P  V WLL P DIY+
Sbjct: 236 GPLHDPNTVMWLLRP-DIYS 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,826,329
Number of Sequences: 5004
Number of extensions: 35049
Number of successful extensions: 53
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)