Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0038
         (427 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0049 + 11889214-11890302                                         29   2.1  
10_08_0022 - 14225725-14226472,14227997-14228420,14228516-14228573     27   8.3  

>09_03_0049 + 11889214-11890302
          Length = 362

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -1

Query: 277 AAPPFKPKPHYCFTAEIGGAVVPTRADSQEVLP 179
           AAPPF  KP    T E GG+V   + + Q++LP
Sbjct: 300 AAPPFDVKPELPATMEHGGSVFVEQPE-QKILP 331


>10_08_0022 - 14225725-14226472,14227997-14228420,14228516-14228573
          Length = 409

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 331 NAPHTLRYKL*GLSIVTTAAPPFKPKPHYC 242
           N P  LR++   +S VTTAAP  + + + C
Sbjct: 62  NLPWKLRHRAAAVSAVTTAAPAPRKRVYVC 91


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,398,958
Number of Sequences: 37544
Number of extensions: 247104
Number of successful extensions: 500
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)