Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0038
         (427 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-3763|AAF47126.2|  669|Drosophila melanogaster CG3090-PB...    28   4.5  
AE013599-3762|AAM68286.1|  669|Drosophila melanogaster CG3090-PA...    28   4.5  
AE014296-1114|AAN12095.1|  127|Drosophila melanogaster CG32398-P...    27   7.9  

>AE013599-3763|AAF47126.2|  669|Drosophila melanogaster CG3090-PB,
           isoform B protein.
          Length = 669

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 271 PPFKPKPHYCFTAEIGGAVVPTRADSQEVLPPVIT 167
           PP+ P  H CF  + GG     + + + V P  +T
Sbjct: 510 PPYVPDSHDCFAEDCGGDSSSHQVEFEVVRPQTVT 544


>AE013599-3762|AAM68286.1|  669|Drosophila melanogaster CG3090-PA,
           isoform A protein.
          Length = 669

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 271 PPFKPKPHYCFTAEIGGAVVPTRADSQEVLPPVIT 167
           PP+ P  H CF  + GG     + + + V P  +T
Sbjct: 510 PPYVPDSHDCFAEDCGGDSSSHQVEFEVVRPQTVT 544


>AE014296-1114|AAN12095.1|  127|Drosophila melanogaster CG32398-PA
           protein.
          Length = 127

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 416 FFYCLDVWTSSQPTWC*VVTGAHRH 342
           FF CL +W +S  TW    + +HR+
Sbjct: 76  FFVCLYIWAASSSTWRQQQSESHRN 100


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,574,611
Number of Sequences: 53049
Number of extensions: 417420
Number of successful extensions: 1092
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1313584398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)