Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0038
(427 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41556-11|AAK39190.2| 365|Caenorhabditis elegans Hypothetical p... 29 1.4
AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical ... 29 1.4
AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical ... 29 1.4
AF078790-2|AAC26940.1| 215|Caenorhabditis elegans Hypothetical ... 28 3.2
AC006681-5|AAK85491.1| 225|Caenorhabditis elegans Hypothetical ... 28 3.2
Z81561-3|CAB04553.2| 350|Caenorhabditis elegans Hypothetical pr... 27 5.6
AL032652-11|CAA21712.2| 350|Caenorhabditis elegans Hypothetical... 27 5.6
Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical pr... 27 7.4
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 27 7.4
AL034489-1|CAA22461.1| 538|Caenorhabditis elegans Hypothetical ... 27 7.4
AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein. 27 7.4
>U41556-11|AAK39190.2| 365|Caenorhabditis elegans Hypothetical
protein C25B8.5 protein.
Length = 365
Score = 29.1 bits (62), Expect = 1.4
Identities = 14/56 (25%), Positives = 26/56 (46%)
Frame = +3
Query: 99 D*LSTXEGITSCSKNQTRKIIISVITGGRTSCESARVGTTAPPISAVKQ*CGFGLK 266
D L + S +N+ R+ + + R S E R+ + PP++ +K GF +
Sbjct: 296 DGLQSDSSFASVRRNRNRRSSCTELASLRQSTEVVRISMSEPPVTPMKSDDGFSFE 351
>AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical
protein Y59A8B.9 protein.
Length = 187
Score = 29.1 bits (62), Expect = 1.4
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = -1
Query: 283 TTAAPPFKPKPHYCFTAEIGGAVVPTRADSQEVLPPV 173
T AAPP +P P A A PT A + PPV
Sbjct: 46 TPAAPPTRPTPSRSSAAPRATAPTPTAAPPKTCAPPV 82
>AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical
protein Y59A8B.7 protein.
Length = 316
Score = 29.1 bits (62), Expect = 1.4
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = -1
Query: 283 TTAAPPFKPKPHYCFTAEIGGAVVPTRADSQEVLPPV 173
T AAPP +P P A A PT A + PPV
Sbjct: 175 TPAAPPTRPTPSRSSAAPRATAPTPTAAPPKTCAPPV 211
>AF078790-2|AAC26940.1| 215|Caenorhabditis elegans Hypothetical
protein F36H12.11 protein.
Length = 215
Score = 27.9 bits (59), Expect = 3.2
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -2
Query: 123 FLHXWKVNREHLLSTYFIRKIGTRLRDSNTAASLDTNAPDV 1
FL +KVN + + +T+++ K ++D N A T D+
Sbjct: 154 FLAAYKVNPKWMENTFYVSKCYVAIKDKNNARKYLTEVCDI 194
>AC006681-5|AAK85491.1| 225|Caenorhabditis elegans Hypothetical
protein R13H9.1 protein.
Length = 225
Score = 27.9 bits (59), Expect = 3.2
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -2
Query: 123 FLHXWKVNREHLLSTYFIRKIGTRLRDSNTAASLDTNAPDV 1
FL +KVN + + +T+++ K ++D N A T D+
Sbjct: 164 FLAAYKVNPKWMENTFYVSKCYVAIKDKNNARKYLTEVCDI 204
>Z81561-3|CAB04553.2| 350|Caenorhabditis elegans Hypothetical
protein Y63D3A.8 protein.
Length = 350
Score = 27.1 bits (57), Expect = 5.6
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = -1
Query: 175 VITEIIILRV*FLLHDVIPSXVESQS*TFVEYVFH 71
V ++++ +L HD++ V QS +E +FH
Sbjct: 145 VAINLVLMSAGYLFHDLVDLLVNEQSARIIELLFH 179
>AL032652-11|CAA21712.2| 350|Caenorhabditis elegans Hypothetical
protein Y63D3A.8 protein.
Length = 350
Score = 27.1 bits (57), Expect = 5.6
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = -1
Query: 175 VITEIIILRV*FLLHDVIPSXVESQS*TFVEYVFH 71
V ++++ +L HD++ V QS +E +FH
Sbjct: 145 VAINLVLMSAGYLFHDLVDLLVNEQSARIIELLFH 179
>Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical
protein K04B12.1 protein.
Length = 1764
Score = 26.6 bits (56), Expect = 7.4
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -1
Query: 130 DVIPSXVESQS*TFVEYVFH*KNWYPPAGFEHRC 29
D IPS V S T + + H + PP GF +RC
Sbjct: 491 DPIPSIVSVNSSTPISFNIH--HLPPPVGFTYRC 522
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 26.6 bits (56), Expect = 7.4
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = -1
Query: 271 PPFKPKPHYCFTAEIGGAVVPTRADSQEVLPPVITEIIILR 149
PP P P + F ++ A P + S + P V+ ++ R
Sbjct: 579 PPPPPPPSFMFNGKVPNAFSPGTSTSPVLSPGVVKSAVVYR 619
>AL034489-1|CAA22461.1| 538|Caenorhabditis elegans Hypothetical
protein Y7A5A.1 protein.
Length = 538
Score = 26.6 bits (56), Expect = 7.4
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 6 PVHSYRAMQRCSNPAGGYQF 65
P H+ RAM++ + GGY F
Sbjct: 459 PTHAMRAMEKFTRDVGGYSF 478
>AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein.
Length = 1766
Score = 26.6 bits (56), Expect = 7.4
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -1
Query: 130 DVIPSXVESQS*TFVEYVFH*KNWYPPAGFEHRC 29
D IPS V S T + + H + PP GF +RC
Sbjct: 493 DPIPSIVSVNSSTPISFNIH--HLPPPVGFTYRC 524
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,428,525
Number of Sequences: 27780
Number of extensions: 207930
Number of successful extensions: 370
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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