Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0038
(427 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g38110.1 68415.m04678 phospholipid/glycerol acyltransferase f... 28 2.3
At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondria... 27 4.0
At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,... 27 4.0
At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondria... 27 4.0
At5g31412.1 68418.m03722 hypothetical protein contains Pfam doma... 27 5.3
At5g37190.1 68418.m04465 COP1-interacting protein 4 (CIP4) simil... 26 9.3
At2g04050.1 68415.m00386 MATE efflux family protein similar to r... 26 9.3
>At2g38110.1 68415.m04678 phospholipid/glycerol acyltransferase
family protein low similarity to SP|O87707 CicA protein
{Caulobacter crescentus}; contains Pfam profile PF01553:
Acyltransferase
Length = 501
Score = 28.3 bits (60), Expect = 2.3
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Frame = -1
Query: 370 VKWLLEPIDIY-NVNAPHTL---RYKL*GLSIVTTAAPPFKPKPHYCFTAEIGGAVVPTR 203
V ++L I +Y N+ P + YKL G+ +V PP PKP + G +V
Sbjct: 259 VGFVLSIIRVYTNIPLPERIARYNYKLTGIKLVVNGHPPPPPKP-----GQPGHLLV--- 310
Query: 202 ADSQEVLPPVITEIIILR 149
+ + VL PV+T + + R
Sbjct: 311 CNHRTVLDPVVTAVALGR 328
>At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondrial
identical to SP|P83484 ATP synthase beta chain 2,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452187|dbj|AK118582.1|
Length = 556
Score = 27.5 bits (58), Expect = 4.0
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -1
Query: 232 EIGGAVVPTRADSQEVLPPVITEI 161
++ GA+V R + QE LPP++T +
Sbjct: 88 QVIGAIVDVRFEDQEGLPPIMTSL 111
>At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,
putative strong similarity to SP|P83483 ATP synthase
beta chain 1, mitochondrial precursor (EC 3.6.3.14)
{Arabidopsis thaliana}, SP|P17614 ATP synthase beta
chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana
plumbaginifolia}; contains Pfam profiles PF00006: ATP
synthase alpha/beta family nucleotide-binding domain,
PF00306: ATP synthase ab C terminal, PF02874: ATP
synthase alpha/beta family beta-barrel domain
Length = 559
Score = 27.5 bits (58), Expect = 4.0
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -1
Query: 232 EIGGAVVPTRADSQEVLPPVITEI 161
++ GA+V R + QE LPP++T +
Sbjct: 91 QVIGAIVDVRFEDQEGLPPIMTSL 114
>At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondrial
identical to SP|P83483 ATP synthase beta chain 1,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452102|dbj|AK118538.1|
Length = 556
Score = 27.5 bits (58), Expect = 4.0
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -1
Query: 232 EIGGAVVPTRADSQEVLPPVITEI 161
++ GA+V R + QE LPP++T +
Sbjct: 88 QVIGAIVDVRFEDQEGLPPIMTSL 111
>At5g31412.1 68418.m03722 hypothetical protein contains Pfam domain,
PF04937: Protein of unknown function (DUF 659)
Length = 433
Score = 27.1 bits (57), Expect = 5.3
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = +3
Query: 27 MQRCSNPAGGYQFF**NTYSTNVHD*LSTXEGITSCSKNQTRKIIISVIT 176
M C N GG F STN H L E + C + K ++ V+T
Sbjct: 150 MNLCVNSKGGKCFLSSKDASTNSHTGLYIFEYVDRCIADVGAKNVVQVVT 199
>At5g37190.1 68418.m04465 COP1-interacting protein 4 (CIP4) similar
to COP1-interacting protein 4 (CIP4) [Arabidopsis
thaliana] GI:13160646; supporting cDNA
gi|13160645|dbj|AB036832.1|;
Length = 876
Score = 26.2 bits (55), Expect = 9.3
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +3
Query: 105 LSTXEGI-TSCSKNQTRKIIISVITGGRTSCESARVGTTAPPISAVKQ*CG 254
L++ EG+ T + +TRK I + GG TS + ++V + ++A + CG
Sbjct: 137 LTSGEGLETEVVEEKTRKRRI-ISPGGNTSPKKSKVDLSPSAVAATTELCG 186
>At2g04050.1 68415.m00386 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile: PF01554
uncharacterized membrane protein family
Length = 476
Score = 26.2 bits (55), Expect = 9.3
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 156 IIISVITGGRTSCESARVGTTAPPISAVKQ*CGFGLKGGAAV 281
+I+S +SC+ RV ++ +S +KQ FG+ A V
Sbjct: 222 VILSCYVRYSSSCDKTRVFVSSDFVSCIKQFFHFGVPSAAMV 263
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,691,469
Number of Sequences: 28952
Number of extensions: 190468
Number of successful extensions: 333
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 332
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 665183504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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